NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAGGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTATCTCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCGAAGTTCT
TTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTT

NNCCACCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATCCTCTTATGGGTTGC
ATGTGATGAGTACTGGAGCCACGTTACAAAAGGTAAGATGATGAGCTGCT
AAGGAATTTGCTTAAAGCCAGATCTACTGAAAAGTAGAACTGAGAAGAAA
TTGGTACTACAATATACAGTACAGTTCACCAACAGAAACCATCTATAATA
ATGATGTACTCCAGCTTGAAAGAGCTAAATGGATGAAAGTAATACATTTA
TAGTGGCATATTTGTATATGAGATTTATAAACCTATCATAACAGTTTTTC
AGTTATTACAGGGTAAATTTTTTAACTAAAGCATGCTGCAGTCTCTTTAT
GGTGCAATCTCTCCTTAAAATAAGGCACCGAGAAAGGCATGGTAAGATTC
TTTGAGTGTCAGTCAGTGGCCCTAAAAACTATTTGAAACTAAATCTATCT
ACTGGGCTTGAGTGAGTGAATAATTTGAATAAAAATATACCAGATATTTT
CCTGGTGACTCATCTATGCAGGGACTTGAAATGTACCTAAGTTTCATGGC
CAAGGGGCTGCTCAAAAAAACCAATTTCTTTTCTAAGGGAACACTATTGA
TTTAAAAGAAAGGGGAGGGGGAGAGAGAGAAAGGGGGGGGGGGGTGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no537_b14.g1 MSMg01no537_b14.g1 CHROMAT_FILE:
MSMg01no537_b14.g1 PHD_FILE: MSMg01no537_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:23 2005
         (596 letters)



>mm_chr6_35468871_35469866
          Length = 996

 Score = 1075 bits (556), Expect = 0.0
 Identities = 580/596 (97%), Gaps = 13/596 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatcctcttatgggttgcatgtgatgagtactggagccacgttacaaaaggtaagat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 201 ttttatcctcttatgggttgcatgtgatgagtactggagccacattacaaaagataagat 260

                                                                       
Query: 61  gatgagctgctaaggaatttgcttaaagccagatctactgaaaagtagaactgagaagaa 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gatgagctgctaaggaatttgcttaaaaccagatctactgaaaagtagaactgagaagaa 320

                                                                       
Query: 121 attggtactacaatatacagtacagttcaccaacagaaaccatctataataatgatgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggtactacaatatacagtacagttcaccaacagaaaccatctataataatgatgtac 380

                                                                       
Query: 181 tccagcttgaaagagctaaatggatgaaagtaatacatttatagtggcatatttgtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagcttgaaagagctaaatggatgaaagtaatacatttatagtggcatatttgtatat 440

                                                                       
Query: 241 gagatttataaacctatcataacagtttttcagttattacagggtaaattttttaactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagatttataaacctatcataacagtttttcagttattacagggtaaattttttaactaa 500

                                                                       
Query: 301 agcatgctgcagtctctttatggtgcaatctctccttaaaataaggcaccgagaaaggca 360
           |||||||||||||||||||||||||||||             ||||||||||||||||||
Sbjct: 501 agcatgctgcagtctctttatggtgcaat-------------aaggcaccgagaaaggca 547

                                                                       
Query: 361 tggtaagattctttgagtgtcagtcagtggccctaaaaactatttgaaactaaatctatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tggtaagattctttgagtgtcagtcagtggccctaaaaactatttgaaactaaatctatc 607

                                                                       
Query: 421 tactgggcttgagtgagtgaataatttgaataaaaatataccagatattttcctggtgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tactgggcttgagtgagtgaataatttgaataaaaatataccagatattttcctggtgac 667

                                                                       
Query: 481 tcatctatgcagggacttgaaatgtacctaagtttcatggccaaggggctgctcaaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcatctatgcagggacttgaaatgtacctaagtttcatggccaaggggctgctcaaaaaa 727

                                                                   
Query: 541 accaatttcttttctaagggaacactattgatttaaaagaaaggggagggggagag 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 accaatttcttttctaagggaacactattgatttaaaagaaaggggagggggagag 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)