BAC Information

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BAC

Clone NameMSMg01-537H09
Chromosome6 (Build37)
Map Location 106,959,938 - 107,128,927
singlet/doubletdoublet
Overlap genePpia-ps6_1128.1
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream geneLrrn1, Setmar, Sumf1, LOC100043718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537H09.T7 (MSMg01no537_h09.b1)MSMg01-537H09.TJ (MSMg01no537_h09.g1)
ACCAG604428AG604429
length746749
length of high quality
(start - end)		637 (50 - 686)638 (78 - 715)
definitionCHROMAT_FILE: MSMg01no537_h09.b1 PHD_FILE: MSMg01no537_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:50 2005CHROMAT_FILE: MSMg01no537_h09.g1 PHD_FILE: MSMg01no537_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,959,938 - 106,960,570)(107,128,290 - 107,128,927)
sequence
NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAGCTCCTTCTTGCACCATGACTGCTTCCACCTTGATGAT
AATGGACTGAACCCCTGAACCTGTAAGCCAGCCCCAATTAAAATGTTATC
CTTATAAGAGTTGCCTTGGTCATGGTGTCTATTCACAGCAGTAAAACCCT
AAAACAGAAGTTGCTTCCTCCTTGGTGATAATGGGCTGAGTCTCTGATCC
TATAAGCCAGTCCCAATTAAATGTTGCCTTGGTCATGGTGTCTGTTCACA
GTAGGCAAACCCTAACTAAGACAAGGACTGTATGCCATTATTCAAAATAG
CTGTCAATACAATACAGTCTAAAAGTGGATAGGCATGGTATGCCCACTAT
ATATATTCATTCACACACTTTCAGTCAACATGTTGTGTGTGCCAAACACA
TTTTAGCATTGTAGTGGTATATGGGAGCAAAACAGTGGTCCTATCTAGAC
CCTGTCCTTTTAAAAACTTAATAGGCAACTAGGGCAGGAGAGATGGCTCA
GCAGTTAAGAACACTTGCAATATAATAAGAAGGACCAGAGTTAGGAATCC
CAACACTCACAAAATAAGCCAGGCATTCCCTTTTCTGGCTTTTAAGTTCA
GTCTCTCTGTTTCTCTCTGTCTCTCATACATGCACACACACATGCACACA
TATGTACATACAGAGAAATACTCTAAAAGGAACACAATTATCATAG

GGGCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTACGCTTCTGTTGGCAAGTG
GATTCTTAAGAAAATACAATTGTAAATAAAACCAACTAGAATCATAAGAA
CCAAACAAACAGGAGTAAGACGAGTTGTGTGTCTAGTTCCGGTATTCAAA
TGTGCCTGAAGAGAGACTCCTGGAGCTCTTGTCACCTGAGTCATGTACGT
GAGGCATTCCTCCTGGTAAAATTAAGATTCTTTCATCAGTGCAATGAAAC
CATGCTGACATAAACATATTACAGCCTTTATAACTTGATCCTTGAATATG
GACTATTTCATATGTCCCTTTGCAAATCATATGTGTGCATGATGTCTAGA
TGTATAAGTATGAACGCATATTTTTATGTGGGAGAAAAAAATTATGTACA
TGTTATGGTGTATATGTGAACCGAGGCAACCTTCAAATGTTGGACCTTGC
CTTTCCACATTGTTTGAGATGTATCCCAGATTACCCATCCTGAAAATTCC
CATCAACTCTTCTGTTTCAGGTTCATATCTCTCTATGGGGCGAACTAGAA
TGATAGGCATCTCAGTCATTGTATCAGGCTTTTATATCGGTTCTGGGAAT
CCCAACTAAAGTCTTAAGGATTTGGGCAAAAAGCACTTTTACTCATTGAG
CCATTTCCCTAGTCCTATAACATAATTATTTTTCTTAGAAATATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_h09.b1 MSMg01no537_h09.b1 CHROMAT_FILE:
MSMg01no537_h09.b1 PHD_FILE: MSMg01no537_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:50 2005
         (637 letters)



>mm_chr6_106959734_106960770
          Length = 1037

 Score = 1216 bits (629), Expect = 0.0
 Identities = 632/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagctccttcttgcaccatgactgcttccaccttgatgataatggactgaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagctccttcttgcaccatgactgcttccaccttgatgataatggactgaacc 264

                                                                       
Query: 65  cctgaacctgtaagccagccccaattaaaatgttatccttataagagttgccttggtcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgaacctgtaagccagccccaattaaaatgttatccttataagagttgccttggtcat 324

                                                                       
Query: 125 ggtgtctattcacagcagtaaaaccctaaaacagaagttgcttcctccttggtgataatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgtctattcacagcagtaaaaccctaaaacagaagttgcttcctccttggtgataatg 384

                                                                       
Query: 185 ggctgagtctctgatcctataagccagtcccaattaaatgttgccttggtcatggtgtct 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggctgagtctctgatcctgtaagccagtcccaattaaatgttgccttggtcatggtgtct 444

                                                                       
Query: 245 gttcacagtaggcaaaccctaactaagacaaggactgtatgccattattcaaaatagctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttcacagtaggcaaaccctaactaagacaaggactgtatgccattattcaaaatagctg 504

                                                                       
Query: 305 tcaatacaatacagtctaaaagtggataggcatggtatgcccactatatatattcattca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaatacaatacagtctaaaagtggataggcatggtatgcccactatatatattcattca 564

                                                                       
Query: 365 cacactttcagtcaacatgttgtgtgtgccaaacacattttagcattgtagtggtatatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cacactttcagtcaacatgttgtgtgtgccaaacacattttagcattgtagtggtatatg 624

                                                                       
Query: 425 ggagcaaaacagtggtcctatctagaccctgtccttttaaaaacttaataggcaactagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggagcaaaacagtggtcctatctagaccctgtccttttaaaaacttaataggcaactagg 684

                                                                       
Query: 485 gcaggagagatggctcagcagttaagaacacttgcaatataataagaaggaccagagtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaggagagatggctcagcagttaagaacacttgcaatataataagaaggaccagagtta 744

                                                                       
Query: 545 ggaatcccaacactcacaaaataagccaggcattcccttttctggcttttaagttcagtc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggaatcccaacactcacaaaataagccaggcattcccttttctggcttttaagttcagtc 804

                                            
Query: 605 tctctgtttctctctgtctctcatacatgcaca 637
           |||||||||||||||||||||||||||||||||
Sbjct: 805 tctctgtttctctctgtctctcatacatgcaca 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_h09.g1 MSMg01no537_h09.g1 CHROMAT_FILE:
MSMg01no537_h09.g1 PHD_FILE: MSMg01no537_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:50 2005
         (638 letters)



>mm_chr6_107128176_107129213
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttacgcttctgttggcaagtggattcttaagaaaatacaattgtaaataaaaccaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttttacgcttctgttggcaagtggattcttaagaaaatacaattgtaaataaaaccaact 693

                                                                       
Query: 61  agaatcataagaaccaaacaaacaggagtaagacgagttgtgtgtctagttccggtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agaatcataagaaccaaacaaacaggagtaagacgagttgtgtgtctagttccggtattc 633

                                                                       
Query: 121 aaatgtgcctgaagagagactcctggagctcttgtcacctgagtcatgtacgtgaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaatgtgcctgaagagagactcctggagctcttgtcacctgagtcatgtacgtgaggcat 573

                                                                       
Query: 181 tcctcctggtaaaattaagattctttcatcagtgcaatgaaaccatgctgacataaacat 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tcctcctgataaaattaagattctttcatcagtgcaatgaaaccatgctgacataaacat 513

                                                                       
Query: 241 attacagcctttataacttgatccttgaatatggactatttcatatgtccctttgcaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attacagcctttataacttgatccttgaatatggactatttcatatgtccctttgcaaat 453

                                                                       
Query: 301 catatgtgtgcatgatgtctagatgtataagtatgaacgcatatttttatgtgggagaaa 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 catatgtgtgcatgatgtctagatgtataagtatgaatgcatatttttatgtgggagaaa 393

                                                                       
Query: 361 aaaattatgtacatgttatggtgtatatgtgaaccgaggcaaccttcaaatgttggacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaaattatgtacatgttatggtgtatatgtgaaccgaggcaaccttcaaatgttggacct 333

                                                                       
Query: 421 tgcctttccacattgtttgagatgtatcccagattacccatcctgaaaattcccatcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgcctttccacattgtttgagatgtatcccagattacccatcctgaaaattcccatcaac 273

                                                                       
Query: 481 tcttctgtttcaggttcatatctctctatggggcgaactagaatgataggcatctcagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcttctgtttcaggttcatatctctctatggggcgaactagaatgataggcatctcagtc 213

                                                                       
Query: 541 attgtatcaggcttttatatcggttctgggaatcccaactaaagtcttaaggatttgggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 attgtatcaggcttttatatcggttctgggaatcccaactaaagtcttaaggatttgggc 153

                                                 
Query: 601 aaaaagcacttttactcattgagccatttccctagtcc 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aaaaagcacttttactcattgagccatttccctagtcc 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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