BAC Information

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BAC

Clone NameMSMg01-537L13
Chromosome6 (Build37)
Map Location 124,231,541 - 124,232,199
singlet/doubletsinglet
Overlap geneEG622297
Upstream geneClec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374
Downstream geneCd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537L13.T7 (MSMg01no537_l13.b1)MSMg01-537L13.TJ (MSMg01no537_l13.g1)
ACCAG604625AG604626
length736741
length of high quality
(start - end)		379 (53 - 431)660 (82 - 741)
definitionCHROMAT_FILE: MSMg01no537_l13.b1 PHD_FILE: MSMg01no537_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:10 2005CHROMAT_FILE: MSMg01no537_l13.g1 PHD_FILE: MSMg01no537_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTTTCTCTGTACCCCATTTTAATAGGGTTATTT
GGTTTTCTGAAGTCTAATATTTGAAATCTTTGTATATTTTGAACATTAGC
ATCTATCAGATGTAGGGTTAGTAAAGATCTTTACCCAATCTGTAGGATGT
CTTTTTGTCCTATTGACGGTGTGCTTTGCCTTACAGATGTTTTTCAGTTT
CATGAGGCCCTGTCTGTAAATAGTTGATCTTAGAGACTAAGCCATTGGTG
TTCTGTTCAGGAAATTTTCCCCTGTGTCAGTGTGTGTAAGGCTCTTTCCC
ACTTGCTCTTCCATTAGATTCAATCTATCTGTTTTGTTTGATTGTTTGTT
TTGGGGGGGGGNGAGTTGTTTGTTTTTTTGNNNNNNNTNNNNNNNTNNTT
NNTTTTNNNTTTTTTNNTTTTTTTTTNNTTTTTTTNNNNNNTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTNTNT
NTNTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTTNNNTTNNTTTTNTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTT
TTTTTNTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT
TTNNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGATCCTCTTGCCTCC
AAATCTGAAATGCTGGGGTTATAGGCATGAATCTTATTTTATTTCTGTGA
AAACACAATTTTAATAATTCTGGAATTACTTTCAAATATTGAAACTTTCA
CCTAAATCTGAGTTTATTTAAGATATTAAATTATATTAACATTTTAATAT
ACTTACAATGTAGTTGATATTTTAAATATAATTCAAATATTACCCTTTAT
AAGAATAAAATATGTATGTTGAGATGACAATTTGCTATAAATATAAAACT
GTTTGAATTATGAAATATTATAGAAAAAACTAATATTCCAATTCTGAAGT
CAAGATATAAATATTTCACAGATAGATACTAACATGTAACTTCATTAATA
TATTAATAATTTGACAGATGTTTATTAAATAAGTAGTTAAAGTCCATGAA
ACTTTCAGAAATTAAGCAAAAAGGCACATAATATTTTAAAGAAGGATACA
GGTATAAATTATATAAGTAAGACTCTGCCATAAAAATTCCTACGGAGAAC
CACAAGAGATGTCAACATAAATAAACATGTAGTATAAATATAAACCCCAG
AAGCTTTATAAAATTATAAAAAGTTTTATAAAATTATGAAAACAAAATTT
ATACAAAACTAATACTCATTCAATATAACAATCATTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_l13.g1 MSMg01no537_l13.g1 CHROMAT_FILE:
MSMg01no537_l13.g1 PHD_FILE: MSMg01no537_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:10 2005
         (660 letters)



>mm_chr6_124231257_124232316
          Length = 1060

 Score = 1266 bits (655), Expect = 0.0
 Identities = 658/659 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagatcctcttgcctccaaatctgaaatgctggggttataggcatgaatcttatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 ctgagatcctcttgcctccaaatctgaaatgctggggttataggcatgaatcttatttta 884

                                                                       
Query: 61  tttctgtgaaaacacaattttaataattctggaattactttcaaatattgaaactttcac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 883 tttctgtgaaaacacaattttaataattctggaattactttcaagtattgaaactttcac 824

                                                                       
Query: 121 ctaaatctgagtttatttaagatattaaattatattaacattttaatatacttacaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctaaatctgagtttatttaagatattaaattatattaacattttaatatacttacaatgt 764

                                                                       
Query: 181 agttgatattttaaatataattcaaatattaccctttataagaataaaatatgtatgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 agttgatattttaaatataattcaaatattaccctttataagaataaaatatgtatgttg 704

                                                                       
Query: 241 agatgacaatttgctataaatataaaactgtttgaattatgaaatattatagaaaaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agatgacaatttgctataaatataaaactgtttgaattatgaaatattatagaaaaaact 644

                                                                       
Query: 301 aatattccaattctgaagtcaagatataaatatttcacagatagatactaacatgtaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatattccaattctgaagtcaagatataaatatttcacagatagatactaacatgtaact 584

                                                                       
Query: 361 tcattaatatattaataatttgacagatgtttattaaataagtagttaaagtccatgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcattaatatattaataatttgacagatgtttattaaataagtagttaaagtccatgaaa 524

                                                                       
Query: 421 ctttcagaaattaagcaaaaaggcacataatattttaaagaaggatacaggtataaatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctttcagaaattaagcaaaaaggcacataatattttaaagaaggatacaggtataaatta 464

                                                                       
Query: 481 tataagtaagactctgccataaaaattcctacggagaaccacaagagatgtcaacataaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tataagtaagactctgccataaaaattcctacggagaaccacaagagatgtcaacataaa 404

                                                                       
Query: 541 taaacatgtagtataaatataaaccccagaagctttataaaattataaaaagttttataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 taaacatgtagtataaatataaaccccagaagctttataaaattataaaaagttttataa 344

                                                                      
Query: 601 aattatgaaaacaaaatttatacaaaactaatactcattcaatataacaatcattttta 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aattatgaaaacaaaatttatacaaaactaatactcattcaatataacaatcattttta 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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