BAC Information

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BAC

Clone NameMSMg01-537M18
Chromosome6 (Build37)
Map Location 69,774,113 - 69,774,813
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43
Downstream geneIgkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537M18.T7 (MSMg01no537_m18.b1)MSMg01-537M18.TJ (MSMg01no537_m18.g1)
ACCAG604682AG604683
length756762
length of high quality
(start - end)
705 (49 - 753)671 (81 - 751)
definitionCHROMAT_FILE: MSMg01no537_m18.b1 PHD_FILE: MSMg01no537_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:16 2005CHROMAT_FILE: MSMg01no537_m18.g1 PHD_FILE: MSMg01no537_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:16 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTAGCAGTTTGACAGCACATCTGAAAGCTCTAGAACAAAAC
GAAGCAAATTCACCCTAGAGAAATATATGGTGCGAAATAATTGAACTCAG
GGCTGAAATCAACCAAGTGTAAACATAAATAAATATACAAAGAATCAACC
AAACCAGGAGCTGGTTCTTTGAGAAAATTGTGGTGTTTTAAGTAACATGA
AAAACATGTACTTTGGAAGGAATTTGTTTAAACACTCAAGAAATACATTT
GTAGTATTCCTCATTTCTGTTGTTGGAAAGTCATGAAAGATATACTATTT
GGGACGTATGGGAAAAGTGTTAAAAATATTTTGATATCTCAACCTCGTAA
TTCTTATTCATTCTGGCAGATTATGTACATTTATAAGGATTTTTTTCTCC
CCCTGGAAAAATTTGTCTTCATAAGATATCCTGAATTTCTTTCTTCTTGT
TAATGAAATTTTGATAGTGTGATATCACTTTAGGTTTACATGTTGTTATG
CTACTTTGAATGTTCAGTTTCTTAAAGATTCTTCAGCCCATACTGTAAAG
AAGCATCAAAGAAAACAATATAAGCCTGGAATAAGACAATGGAGATGAGA
TGATTTTCATTTTAAACTATTACATGTATCCCAGAGACCTCCTTAGACTA
TGCTAATTATGTGAGCATGTAAGTAGAAGCCAAGTCTATTTTAAATCTCA
ACATCN
NNCCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGATGGTCATTATTTT
AGGAATAAAGTATAGATGCCAGGACACAGTAACAAATCCATGGCATGTTT
ATGATATAGAACTGTAAGGGCAATTCACCAAAAACTTAGTCATATAGGCT
GGTGATATGAATAAGTCACACTTACTTACTATGTTCAGGTACTAGGATTT
CTTTAGGGAAACATGAATATTCAATTATTCATATCTCATATTACCAGAAG
TTATTAGAAATTCAAGGTTATGTACAAATGGAAAAAGTCTTCCAAAAGAA
TACATGTTTTGTATCCACTGGAAAGGAATCCTGTAATTTATTTCTGTTTT
CATCTTTTATGTAGTTATGTAACTAGAATTTTGGGCAACGGCTTGCTAGC
CATCATTCTGAAGGTGATAAAAAGTGTAGTGCAACAATCCAAAAAAATGA
CTATTTTCATTTAGATTTTTACATACTATTGAAAGTTCCTTAGGTGTATT
TTTGCATAATTATTTGTTGAACATTTATACAGGCAACTTTTGAACATTCA
TTTAAGAAGGTTGCATAAGTAAAGTTGTCTTTATAAAGAAAAGAAATTGA
GTTCATTATGAAAAGTTGTTGGATGTATTTCAAATAATCCATTATAACTT
CAACCTAATATTCCCTTTCTGGCAGAATACATATCCTAATATTAATTTTC
GGAATTGAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_m18.b1 MSMg01no537_m18.b1 CHROMAT_FILE:
MSMg01no537_m18.b1 PHD_FILE: MSMg01no537_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:16 2005
         (705 letters)



>mm_chr6_69773731_69774835
          Length = 1105

 Score = 1203 bits (622), Expect = 0.0
 Identities = 682/702 (97%), Gaps = 2/702 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcactagcagtttgacagcacatctgaaagctctagaacaaaacgaagcaaattca 64
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1083 gaattcactagcagtttgacagcacatctgaaagctctagaacaaaacaaagcaaattca 1024

                                                                        
Query: 65   ccctagagaaatatatggtgcgaaataattgaactcagggctgaaatcaaccaagtgtaa 124
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ccctagagaaatatatggtgggaaataattgaactcagggctgaaatcaaccaagtgtaa 964

                                                                        
Query: 125  acataaataaatatacaaagaatcaaccaaaccaggagctggttctttgagaaaattgtg 184
            ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct: 963  acataaataaataaacaaagaatcacccaaaccaggtgctggttctttgagaaaattatg 904

                                                                        
Query: 185  gtgttttaagtaacatgaaaaacatgtactttggaaggaatttgtttaaacactcaagaa 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  gtgttttaagtaacatgaaaaacatgtactttggaaggaatttgtttaaacactcaagaa 844

                                                                        
Query: 245  atacatttgtagtattcctcatttctgttgttggaaagtcatgaaagatatactatttgg 304
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843  atacatttgtagtactcctcatttctgttgttggaaagtcatgaaagatatactatttgg 784

                                                                        
Query: 305  gacgtatgggaaaagtgttaaaaatattttgatatctcaacctcgtaattcttattcatt 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  gacgtatgggaaaagtgttaaaaatattttgatatctcaacctcgtaattcttattcatt 724

                                                                        
Query: 365  ctggcagattatgtacatttataaggatttttttctccccctggaaaaatttgtcttcat 424
            |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 723  ctggcagattatatacatttataaggatttctttctccccctggaaaaatttgtcttcat 664

                                                                        
Query: 425  aagatatcctgaatttctttcttcttgttaatgaaattttgatagtgtgatatcacttta 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  aagatatcctgaatttctttcttcttgttaatgaaattttgatagtgtgatatcacttta 604

                                                                        
Query: 485  ggtttacatgttgttatgctactttgaatgttcagtttcttaaagattcttcagcccata 544
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 603  ggtttacgcgttgttatgctactttgaatgttcagtttcttaaagattcttcagcccgta 544

                                                                        
Query: 545  ctgtaaagaagcatcaaagaaaacaatataagcctggaataagacaatggagatgagatg 604
            |||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 543  ctgtaaagaaacatcaaagaaaacaacataatcctggaataagacaatggatatgagatg 484

                                                                        
Query: 605  attttcattttaaactattacatgtatcccagagacctcctt-agactatgctaattatg 663
            ||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct: 483  attttcattttaaactattacatgtgtcccagagacctccttaag-ctatgctaattatg 425

                                                      
Query: 664  tgagcatgtaagtagaagccaagtctattttaaatctcaaca 705
            | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  taagcatgtaagtagaagccaagtctattttaaatctcaaca 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)