XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
GAAAACTGTCTGTCCATAGCTCAAAAATTCATAACTCATTTTTAAAATGG
AGTCATTTATTTTCTTGGTGTTTAGTTTTTATTTTAGTACACTGTATATT
CTATACACTAACCTTCTGTAAGACATAGAGATGTCAAATTTTCTCATTTC
ATAGGCTGCCTCTCTTGTTAATGAATTAAAAACTTTAATACAGAATCTTT
TCCTTCTTTTTGAGAAGTTTATATATGTATACAGTGAATATAAACATGAT
AATTTCTGTGATTACAGTTTCTAGCTGCTTTTATATCATCCTATTGTACC
TCCTTCCAACTTTATCCAATATGTCTCATATTGGATAAAGTTGGAAGGAG
GTACATATGTATATCTCCAATTTATATTTACATCTATATCTATTTCCTCT
ATGTCTATACCTAATCTATATATTATCTAATATATATCTATATCCATATG
TTATACTAAATCCAGTAAGTGCTGCCAGTGAGGATGGATATATGACTACT
GAAACCTGGAGTGTACAGAAAGAATGATTAGCCTTCTCTAAGCTACTATA
AATGTCTAATAGATTCTCACTATGGGGTTGGGTATGAACATTATCTATCC
CATCTATGCTGGCCTTTAACTGTTTTGATATTGTGTACATCTTCTGCAGA
TAAACACACCAGCTGTGAGTTCATGAGTGCA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATAACGAATGGCTGAGAAACACCTG
AAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCATTTCACACAAGTCAGAATGGCTAAGATCAAAAATTCA
GTTGACAGCCAATACTGGCGAGGATGTGGTGAAAGAGGAACACTCCTCCA
CTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGC
AGTTTCTCAGAAAATTGGACATGGTACTACTGGAGGATCCTCCAATACCT
CTCCTGGGCATATATCGAGAAGATCTTCCAACTAGGAAGAAAGAAACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATACCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGGATTTATGAAATT
CCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCC
AATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAG
TCCAGAAACTTAGAATACCCAGGATATAAGTTACAATTTGTGAAACACAT
GAGACTCAAGAAGAACGAAGACCCAAGTGTGGACACTTTGCC

Query= MSMg01no538_b03.b1 MSMg01no538_b03.b1 CHROMAT_FILE:
MSMg01no538_b03.b1 PHD_FILE: MSMg01no538_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:38 2005
         (695 letters)



>mm_chr6_25189601_25190700
          Length = 1100

 Score = 1145 bits (592), Expect = 0.0
 Identities = 669/696 (96%), Gaps = 6/696 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgaaaactgtctgtccatagctcaaaaattcataactcatttttaaaatgg 64
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttttgacaactgtttgtccatagctcaaaaattcataactcatttttaaaatgg 265

                                                                       
Query: 65  agtcatttattttcttggtgtttagtttttattttagtacactgtatattctatacacta 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agtcattcattttcttggtgtttagtttttattttagtacactgtatattctatacacta 325

                                                                       
Query: 125 accttctgtaagacatagagatgtcaaattttctcatttcataggctgcctctcttgtta 184
           ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 326 acc-tctgtaagacatagagatatcaaattttctcatttcaaaggctgcctctcttgtta 384

                                                                       
Query: 185 atgaattaaaaactttaatacagaatcttttccttctttttgagaagtttatatatgtat 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 385 atgaattaaaaactttaatacaggatcttttccttctttttgagaagtttatacatgtat 444

                                                                       
Query: 245 acagtgaatataaacatgataatttctgtgattacagtttctagctgcttttatatcatc 304
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 acagtgaatataaacataataatttctgtgattacactttctagctgcttttatatcatc 504

                                                                       
Query: 305 ctattgtacctccttccaactttatccaatatgt---c-t-catattggataaagttgga 359
           ||||||||| ||||||||| |||||||||||| |   | | ||||||||||||| |||||
Sbjct: 505 ctattgtacatccttccaattttatccaatatatgcacatgcatattggataaaattgga 564

                                                                       
Query: 360 aggaggtacatatgtatatctccaatttatatttacatctatatctatttcctctatgtc 419
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 565 aggaggtacatatgtatatctccaatttatatttatatctatatctatctcctctatgtc 624

                                                                       
Query: 420 tatacctaatctatatattatctaatatatatctatatccatatgttatactaaatccag 479
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 625 tatacctaatctatatattatctaatatatacctatatccatatgttatactaaatccag 684

                                                                       
Query: 480 taagtgctgccagtgaggatggatatatgactactgaaacctggagtgtacagaaagaat 539
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagtgctgccagtgaggatgggtatatgactactgaaacctggagtgtacagaaagaat 744

                                                                       
Query: 540 gattagccttctctaagctactataaatgtctaatagattctcactatggggttgggtat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 gattagccttctctaagctactataaatgtctaatagattctcactatgtggttgggtat 804

                                                                       
Query: 600 gaacattatctatcccatctatgctggcctttaactgttttgatattgtgtacatcttct 659
           ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 805 gaacattatctattccatctatgctggcctttaactgtattgatcttgtgtacatcttct 864

                                               
Query: 660 gcagataaacacaccagctgtgagttcatgagtgca 695
           ||||||||||||||||||||||||||||||||||||
Sbjct: 865 gcagataaacacaccagctgtgagttcatgagtgca 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1100
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1090
Effective search space:   746650
Effective search space used:   746650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)