BAC Information

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BAC

Clone NameMSMg01-539F09
Chromosome6 (Build37)
Map Location 108,240,024 - 108,240,455
singlet/doubletsinglet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539F09.T7 (MSMg01no539_f09.b1)MSMg01-539F09.TJ (MSMg01no539_f09.g1)
ACCAG605852AG605853
length688747
length of high quality
(start - end)
---432 (81 - 512)
definitionCHROMAT_FILE: MSMg01no539_f09.b1 PHD_FILE: MSMg01no539_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:15 2005CHROMAT_FILE: MSMg01no539_f09.g1 PHD_FILE: MSMg01no539_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTCTCTTATATTGCGGCCGCTATACGACTCCTATCGCAGAGGACCGCGG
ATTCAGTGCTCCGGGGTGGTCACTGGCCCTCACAACACAGTATTCCAGCA
TTACCCCCCCCTTTTTTTTTTTGGGGCCTTTAAAAAAACTTTTTTTTTCA
ACAATCCACCTTTCCCCCCCCCTTCTTATCTTTTCTTCATNNNNNNNTAC
AATGACCTTGTGTTTCCATACTNTTTTGTAATTTTCCTGGGGGTGGTTTA
AGAAAGAACCCCAGGTTTGCCCGGCTAAAGGCCCGGGAATTTACTCCAGT
CCGGGTAAAAAACCATGTTCCCCCTTAAAAAAAACAAAAAGACCCCCCCA
ACCCCCCCCCTGGGAAAAAAACCCTTTTTTCCCTTTTGGGGGGAAACCCT
TAATTTTTTCTTTCCCCCAAAAAAAAAAAAAACCCCCCCCCCTCTTTAAA
AAAAAAAAAAAAAACCCCCCTCTTCTTTTTAAAAAAAAGTGGTAACCCCC
CCTTTTTTTAAAAAACCCCGGGCCCCCCCTTTTTAAAAAAAAAAAAAGAA
AACCCCCCCCCTCTTTTTGTGGGGGGGCCCACCCCTTTTTTTTGAGGGAG
TATTTAAAAAAAAAAATTTCTCCCCCCCCCCCTCGCTGTGTGTGGGTTTA
TAGAAGAGAAAACTCTTTCCTCCTTTCTTTTCATATAA
CTTCCATGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGAGGGAAGTCTACAGAG
CTGTTTTACAGCATCTTTCAATGGAAACGTGGATATTTTGGTATTTGAGA
ATAGGTCTTGAAGCTTGTCATGGGAGTTTCCAAAGACCAGCTGTTGAATG
CATTTATACATACTTAATGAGGATTTTTATGAATGGCTATTAAAAGATCT
GAGGGCAGTTATATTCAGGTTCAAAGAAAGGATGTCCTATGGGAATTTGA
TATTTTTGAACTGTTGGCAGACCACAAACTGGTATTTACTGGCATTCTTG
TGTTCACGGGTCTAACATAACAGCTGAAGGTTGCATTGCCATGCATTTCC
TCTCCTCTTAACTCTACTTTTGTGTTCCTTTTTAATGTGAAGCATCAAAT
ATTTCCACACACTTGAAAAAAATGGAACTCTTTACGTTTTGTGCCTGTAA
TGATGAATGTACATGCCTGATAGTTTGTGCGGGTGCACACGTAGCTCATC
ATGTATGGAGGCTAACGGACAGCTTTGTGGAGTCAGCTCTGTTTAACCCT
ATGTGATCCTCCTAGGATTTAATTCAGGTCACTAGGTCTGTGTGGCAATC
CCTACGTCCACAGAATATCTCTCCAGCCCTGCTTCTCACGTTTGGAGGCT
TGCTTACTGTCTTACTGCTCTACTACAGATACTGTTGGTATAACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_f09.g1 MSMg01no539_f09.g1 CHROMAT_FILE:
MSMg01no539_f09.g1 PHD_FILE: MSMg01no539_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:15 2005
         (432 letters)



>mm_chr6_108239824_108240655
          Length = 832

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgagggaagtctacagagctgttttacagcatctttcaatggaaacgtggatattttg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gatgagggaagtctacagagctgttttacagcatctttcaatggagacgtggatattttg 260

                                                                       
Query: 61  gtatttgagaataggtcttgaagcttgtcatgggagtttccaaagaccagctgttgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttgagaataggtcttgaagcttgtcatgggagtttccaaagaccagctgttgaatg 320

                                                                       
Query: 121 catttatacatacttaatgaggatttttatgaatggctattaaaagatctgagggcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttatacatacttaatgaggatttttatgaatggctattaaaagatctgagggcagtt 380

                                                                       
Query: 181 atattcaggttcaaagaaaggatgtcctatgggaatttgatatttttgaactgttggcag 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 atattcaggttcaaagaaaggatgtcctatgggaatttaatatttttgaactgttggcag 440

                                                                       
Query: 241 accacaaactggtatttactggcattcttgtgttcacgggtctaacataacagctgaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accacaaactggtatttactggcattcttgtgttcacgggtctaacataacagctgaagg 500

                                                                       
Query: 301 ttgcattgccatgcatttcctctcctcttaactctacttttgtgttcctttttaatgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcattgccatgcatttcctctcctcttaactctacttttgtgttcctttttaatgtga 560

                                                                       
Query: 361 agcatcaaatatttccacacacttgaaaaaaatggaactctttacgttttgtgcctgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatcaaatatttccacacacttgaaaaaaatggaactctttacgttttgtgcctgtaa 620

                       
Query: 421 tgatgaatgtac 432
           ||||||||||||
Sbjct: 621 tgatgaatgtac 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)