GATAAAATTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAAGG
ATCCGCGGAATTCTCTTCTTCCGAAAAATAGACAGACATTTTCAGAAGAT
ACCTTTATAAAGCATGTGTTTTTGTATACTTTTATTACCCATTAAAACAT
TTCAAATTAGGAAAGAGTGATATCTTGAGACTGGTGCTGGCAGCAAAGGC
TTTAGAATTGGCGAGGTAGGGAATCTGAGTATTTAAGACCAAGGACTATA
TGTCTAATCAGTCTTCAAAACAAAGATATTTTACTTGTAGACACTAGGCT
AAAATAAGTATAAACCCATGTATAAATGCTTTCAGATTTAGTTTGTTAGT
CAGTTTCTCAATGATGATCAACATAAGCAGCATGAGCAATGTGAGAAACC
AATATAAAAAAGAAGTTTCATTCCGCGTCAAGAATGTAGACATTTCATAT
TCGTAATCAACAAGCCTTATTGATTTTATTAGTTTTAATTAAATTTTTTA
TTAAGTATTTTCTTCATTTACATTTCCAGTGCTATCCCAAAAGTCCCCCA
TACCCTCCCCCCCCACTCCCCAACCCACCCACTCCCACTTCTTGGCCCTG
GCATTCCCCTGTACTGAGGCATATAAAGTTTGCATGAGCAATGGGCCTCT
CTTTCCACTGATGGCCCACTTCTGATACATATGCAGCTAGAGACACGAGC
TCCGGGAGGTACTGGGTAGTTCATATTGTCGTTTCCACTATAGGGT

TTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGGGAAGAGGAGACAGAA
AGATCCAGAGGGGATAGAGAACACCAAGAAAAACCAGGCTCTCTAATCAA
CATCAGCAAAGCTCATATGTACTCACAGAGACTGGGGTGGCATGCACAGA
GCCTTCACAAGTCTATCCTGAGTCCTCTGAGCTTATATTATGGATATCAG
TTTAGTGTTTTTATGGGATCCCTGAGTCTATTAATGAGTGGGTCTGTAAT
GTTTTGTGTTTCCTCTTGGGCTTTTTTCCTTCTGCTTTTCTCCTATTCCA
GTGTGTAAGTTTTTGTTTTATCTTGTTATGTTTTATTTTATTTTTATTAT
TATTATCCCTCAGAAAGCTGTTTGTTTTCTAATAATAAACAGAAAGCAAT
TGAATCTGGATGGGAGGGGATGTGGAGAGAAACTGGGAGAATTGGAGAGA
AGGGGAACTATAATCAGGGTATATTATGTAAGAAAAATTCCATTTTCTAT
AAAAGGAAAATAAAAAGAAATGGTCCGTTATAGAAATATGGTTGAAAACA
GATTATTCTTAAATATTTTGTGGTATTTGAACATAGTCGTCAAATCCACT
TCTTTCTACATATATGAATAAAAACATGGAAAATCCCCTATTACCTGTGC
AAGGGTATAGTCTTTAGAATATATATGTGACCCTACTTATTGTACCTCCG
GGTGGCCCTAAACATTTTTAAAN

Query= MSMg01no539_h03.b1 MSMg01no539_h03.b1 CHROMAT_FILE:
MSMg01no539_h03.b1 PHD_FILE: MSMg01no539_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:24 2005
         (564 letters)



>mm_chr6_9571556_9572520
          Length = 965

 Score =  942 bits (487), Expect = 0.0
 Identities = 531/547 (97%), Gaps = 5/547 (0%)
 Strand = Plus / Minus

                                                                       
Query: 21  gaaaaatagacagacattttcagaagatacctttataaagcatgtgtttttgtatacttt 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaaaaatagacagacattttcagaagatacctttataaagcatgtgtttttgtatacttt 581

                                                                       
Query: 81  tattacccattaaaacatttcaaattaggaaagagtgatatcttgagactggtgctggca 140
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 580 tattaccaattaaaacatttcaaattaggaaagaatgatatcttgagactggtgctggca 521

                                                                       
Query: 141 gcaaaggctttagaattggcgaggtagggaatctgagtatttaagaccaaggactatatg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gcaaaggctttagaattggcgaggtagggaatctgagtatttaagaccaaggactatatg 461

                                                                       
Query: 201 tctaatcagtcttcaaaacaaagatattttacttgtagacactaggctaaaataagtata 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctaatcagtcttcaaaacaaagatattttacttgtagacactaggctaaaataagtata 401

                                                                       
Query: 261 aacccatgtataaatgctttcagatttagtttgttagtcagtttctcaatgatgatcaac 320
           |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 400 aacccatgtagaaatgctttcagatttagtttgttagtcagcttctcattgatgatcaac 341

                                                                       
Query: 321 ataagcagcatgagcaatgtgagaaaccaatataaaaaagaagtttcattccgcgtcaag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 340 ataagcagcatgagcaatgtgagaaaccaatataaaaaagaagtttcattctgtgtcaag 281

                                                                       
Query: 381 aatgtagacatttcatattcgtaatcaacaagccttattga-ttttattagttttaatta 439
           ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| 
Sbjct: 280 aatgtagacgtttcatattcgtaatcaacaagccttattgatttttattggttttaatt- 222

                                                                       
Query: 440 aattttttattaagtattttcttcatttacatttccagtgctatcccaaaagtcccccat 499
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 -attttttattaggtattttcttcatttacatttccagtgctatcccaaaagtcccccat 163

                                                                       
Query: 500 accct--ccccccccactccccaacccacccactcccacttcttggccctggcattcccc 557
           |||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 162 accctccccccccccactccccaacccacccactcccacttcttggccctggctttcccc 103

                  
Query: 558 tgtactg 564
           |||||||
Sbjct: 102 tgtactg 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space:   529070
Effective search space used:   529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)