NNNNTTTCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTCAGTTTGTGTTTTCTTTACTGCGTCTATTTCCAT
TTTCAGTTCTTGAACAGTGTTATTCATTTCCTTCACCTGTTTGATTGTAT
TTTACTGAATTTCTTTAAGAGATTCGTTAATTTCTTCTTTAAAGGCTTCT
AACATCTTTATAATATTGTGGTTCAGTTATTTTCCTGTGCTTCAGCTGTG
TTAGTATATCCAGAGGATAGCAGGGTAGCTGGGCTCTGGTGTTGTCATAT
TGCTTTGACTCATGTTGATTGTGTTCTAATGTTATCCTTTAGCAACCTGA
TTGTCCCTTGTTGTATACCGGCTCGTGGCCTACATGAACTGGGTACACCT
GGGAGGCAGGCTGGGGCTGAAAGAGACTAGACAGCGAGAAAGGAATATGA
AGCCAAGACAAGTGTGCCGATCAAGGCCAGCGAGTTTACTAAGAGAGTAT
GCTTATAAGGGGAAAGGCCCATCCCTGCCAGCTCATTCTTGGTGCCTGGA
GCCAGCCCATAGGTGATCTACAGAGTGTGTCTTTGGAAAGTCTCAAGGAC
CTTTCAGCAGGAAGCAGAGTATTAGAGAAGACCCATCTCTTGTGCTCCTT
CCTTGTTTTAGATTTCTCATCAATTTGTAATCTTCAAGATGTTTGTTAGT
TTTCAGTCTAAGTCTTCATTTTCAGCTTTATTGGNTTTGGCCATTTATGG

CGGAGCGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCTTAGAGCAAGC
CAGAAGCTTGTCTTTATGCAAATAGAAAGAAATCTTCATCAAAATTACTT
TGTTTTATATTCTCGAAATAAGAATTAGGTCATTTTCTGAGTACTTGATA
GCTATATGCCAATGTACCTTTACAGCAAGAAATATTTGCTTAGGTTCATA
ATTTGAATTATAGAAAGTATTGGAGATAAATTATGTTGTCTACTGTATAT
TTATTATGGTTAAAATTTTGAGAATGACTTAATTCGATTTAAAAATGTTA
ATTTTGAGTAATTACTCTAATACAGAGCTGCCAACAACATCTGTTTGCAT
AATCATTATGGGAAGGAAAAGGTACTCTCGGGTTCTAGCCCTGACTTTCA
ATTGAGTTTAACATTTACAAAAACTTTATTGGGAATTTAAAAAAAAAAAA
GTCTAAGTGTGTCTTATTGTGCAGGCAGAACACTGCTCTGTAACTTGCAT
ATGTCATCTAATAATACAGAATAAACAAACTCTGTCATTTCATTATTATA
GGGATGAAAAGAATGCCTTTGAGCTTATTTGCATAAAGCTTTGTGCAAAA
TTAACACTTGTCAGTGTAGCCTTTTTAGCATTTTAATACCTCAAGCAGGA
CTGGTTCCTCTGGACTTTCAACCATCCCTGAGTGCTG

Query= MSMg01no539_m03.g1 MSMg01no539_m03.g1 CHROMAT_FILE:
MSMg01no539_m03.g1 PHD_FILE: MSMg01no539_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:49 2005
         (577 letters)



>mm_chr6_15362608_15363584
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcttagagcaagccagaagcttgtctttatgcaaatagaaagaaatcttcatcaaaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ttctcttagagcaagccagaagcttgtctttgtgcaaatagaaagaaatcttcatcaaaa 260

                                                                       
Query: 61  ttactttgttttatattctcgaaataagaattaggtcattttctgagtacttgatagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactttgttttatattctcgaaataagaattaggtcattttctgagtacttgatagcta 320

                                                                       
Query: 121 tatgccaatgtacctttacagcaagaaatatttgcttaggttcataatttgaattataga 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgccaatgtaccttgacagcaagaaatatttgcttaggttcataatttgaattataga 380

                                                                       
Query: 181 aagtattggagataaattatgttgtctactgtatatttattatggttaaaattttgagaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aagtattggagataaattatgttgtctactgtatatttattatggttaaaattttgggaa 440

                                                                       
Query: 241 tgacttaattcgatttaaaaatgttaattttgagtaattactctaatacagagctgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacttaattcgatttaaaaatgttaattttgagtaattactctaatacagagctgccaa 500

                                                                       
Query: 301 caacatctgtttgcataatcattatgggaaggaaaaggtactctcgggttctagccctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caacatctgtttgcataatcattatgggaaggaaaaggtactctcgggttctagccctga 560

                                                                       
Query: 361 ctttcaattgagtttaacatttacaaaaactttattgggaatttaaaaaaaaaaaagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcaattgagtttaacatttacaaaaactttattgggaatttaaaaaaaaaaaagtct 620

                                                                       
Query: 421 aagtgtgtcttattgtgcaggcagaacactgctctgtaacttgcatatgtcatctaataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgtgtcttattgtgcaggcagaacactgctctgtaacttgcatatgtcatctaataa 680

                                                                       
Query: 481 tacagaataaacaaactctgtcatttcattattatagggatgaaaagaatgcctttgagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacagaataaacaaactctgtcatttcattattatagggatgaaaagaatgcctttgagc 740

                                                
Query: 541 ttatttgcataaagctttgtgcaaaattaacacttgt 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatttgcataaagctttgtgcaaaattaacacttgt 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)