Query= MSMg01no539_n24.b1 MSMg01no539_n24.b1 CHROMAT_FILE:
MSMg01no539_n24.b1 PHD_FILE: MSMg01no539_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:59 2005
(692 letters)
>mm_chr6_19386088_19387176
Length = 1089
Score = 1270 bits (657), Expect = 0.0
Identities = 680/689 (98%), Gaps = 4/689 (0%)
Strand = Plus / Plus
Query: 5 gaattcaat-aaatcacagactaccctgagagagaaatgccttcacttctaaggaacaag 63
||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 gaattcaataaaaagacagactaccctgagagagaaatgccttcacttctagggaacaag 263
Query: 64 aggtgagttctgtggagagattgcagttttgatggaatgactaatggtaaagctgggaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggtgagttctgtggagagattgcagttttgatggaatgactaatggtaaagctgggaca 323
Query: 124 ttttgcgatgccaataaataatttcctgtattattatgtaaaattcagttttgagattag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttgcgatgccaataaataatttcctgtattattatgtaaaattcagttttgagattag 383
Query: 184 taatcacatttccaaagagcattgaaaaagaaaatactagacacagttggaaaaggcttt 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 taatcacatttccaaagagcattgaaaaagaaaatactagatacagttggaaaaggcttt 443
Query: 244 atgcttgtcagataattttatgtattattaattaaaattctactttaagattagtaatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgcttgtcagataattttatgtattattaattaaaattctactttaagattagtaatgt 503
Query: 304 agttgaattttccaaaaaaaatttttaagaagataatattagataaagttggaagagact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agttgaattttccaaaaaaaatttttaagaagataatattagataaagttggaagagact 563
Query: 364 ttatgcatatcaggtacaatctcttagccagtgaagatacaacaacaatagcaacgaccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatgcatatcaggtacaatctcttagccagtgaagatacaacaacaatagcaacgaccc 623
Query: 424 aaacaaattcttttccagaaaggtcaaagaggttttccaaattcaaatatttatttgctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaacaaattcttttccagaaaggtcaaagaggttttccaaattcaaatatttatttgctt 683
Query: 484 acaaaataaaggctaagtacctaaacctgactgaaagtgtcctgaaaatatttagatttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaaaataaaggctaagtacctaaacctgactgaaagtgtcctgaaaatatttagatttc 743
Query: 544 tgataaatgcatttgagttaaaggccaaataacaattgtaaacataggtattgattaaag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgataaatgcatttgagttaaaggccaaataacaattgtaaacataggtattgattaaag 803
Query: 604 gaggcttttttttctttttttctgtgaagaatccttttttgtgcattggttgctgctatt 663
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gaggctttttttt---tttttctgtgaagaatccttttttgtgcattggttgctgctatt 860
Query: 664 caggttcaatatgagatagttttcaagtt 692
||||| |||||||||||||||||||||||
Sbjct: 861 caggtacaatatgagatagttttcaagtt 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1089
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1079
Effective search space: 735878
Effective search space used: 735878
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_n24.g1 MSMg01no539_n24.g1 CHROMAT_FILE:
MSMg01no539_n24.g1 PHD_FILE: MSMg01no539_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:59 2005
(618 letters)
>mm_chr6_19545964_19546980
Length = 1017
Score = 1172 bits (606), Expect = 0.0
Identities = 615/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Minus
Query: 1 tgatagtgggaccaggaagtggaaacaatatctggaatataaataagtaaaacaataatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tgatagtgggaccaggaagtggaaacaatatctggaatataaataagtaaaacaataatg 758
Query: 61 aaaaaaaacaaagaattcacattcattctagacaagtgttttccaagtcctaggaatgta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 -aaaaaaacaaagaattcacattcattctagacaagtgttttccaagtcctaggaatgta 699
Query: 121 ataagtggtttaatgttcacaaatttttagtttttcaagatgaataattttgtctcatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ataagtggtttaatgttcacaaatttttagtttttcaagatgaataattttgtctcatga 639
Query: 181 tttccataacaataaaaatattcttagcaatattggattttacatagattaactaaaatg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttccataacaatataaatattcttagcaatattggattttacatagattaactaaaatg 579
Query: 241 ctatctttgtcttgtaagagcaactgacaagatactgtgataggctgttgaaacagagac 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctatctttgtcttgtcagagcaactgacaagatactgtgataggctgttgaaacagagac 519
Query: 301 acacatgaagtaggaaatcacttgggcacttataggcagagatctgttaagataacagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acacatgaagtaggaaatcacttgggcacttataggcagagatctgttaagataacagac 459
Query: 361 tagtctgtgccaaaatcctgtggttgacatttctaagccattatgttaaaaatacataag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tagtctgtgccaaaatcctgtggttgacatttctaagccattatgttaaaaatacataag 399
Query: 421 gactaacataggtgagactactactaataagcatcattctactttatataatactgtcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gactaacataggtgagactactactaataagcatcattctactttatataatactgtcat 339
Query: 481 atacattaaatttaaaagtgacccttaaggctcatgtgtgaaagatttttgcaatctgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atacattaaatttaaaagtgacccttaaggctcatgtgtgaaagatttttgcaatctgct 279
Query: 541 gatatggtagatatgactaattgtaaggccatcagtgcattaacctatcagtaaattcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gatatggtagatatgactaattgtaaggccatcagtgcattaacctatcagtaaattcat 219
Query: 601 gctgatgtaattgacagt 618
||||||||||||||||||
Sbjct: 218 gctgatgtaattgacagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
