NGGGAACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAAGAATTCATGAAAACCAAAGAACCATGGTTGTCTTA
GAGCATTTAAAATATCTTGCCTGGTCATGGATAAACACATGTATTTGGCA
AAATAATATTATTTTAGGTAGAACAATTTATGGTTTAATCATAATTACTT
TCCTAGATAAGACATCATACAACTATTTATGTTCTATGCATTGTTTTGAC
AGATATTTATATGATATCCTTTTCTTTTTCTTTTCTGCCTTTCTATATCC
CTTCATGTCTAATGCCCTAACTATACATAAAATCACATATTTTCATGTAC
GCTGTAGACTCATTCTCTGACATTTTACTCATCACTTCATAGATATTAAT
ATTTCCTTAGTTTTGAAAGTCTGAAAGTTCTCATGTTATTTTAGGAAATT
AACATAGAAGCTTGAGAACTGTCAGTGAACTATTGTTGTGGATGTCCATT
ATACTTTCAGGATAGACATTCATGGTTGTGCTAAGCTTATTCTAAATTAT
ATGCAAATTCTATATATTTCATGAAATTATTAACATAAATTTGTTAAATT
TGGTTATTTTAATTTTTCATTTATTTTTGATATAATATAGTCATATAACT
TCCCCCTTCTTTTCCTCCCTCTGCATAATTCTATTCACTCTTTTGAATTC
CTGAGTACCAATACTT

TTAATACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCTGTTGTATGTC
TCCCTTTTCATTTCTGATTTTGTTAATTAGGATTTTGTCCCTGTGCCCTT
TAGTGAGTCTAGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAAC
CAACTCCTCGTTTGGTTAATTCTTTGAATAGTTCTTCTTGTTTCCACTTG
TTTGATTTCATCCCTGAGTTTGATTATTTCCTGCTGTCTACTCCTCTTGG
GTGAATTTGCTTCCTTGTTTTCTAGAGCTTTTAGATGTGTTGTCAAGCTG
CTAGTATGTGCTCTCTCCCGTTTCTTCTTGGAGGCACTCAGAGCTATGAG
TTTCCCTCTTAGAAATGCTTTCATTGTGTCCCAAAGGTTAGGGTATATTG
TGGCTTTGTTTTCATTAAACTCTAAAAAGTCTTTAATTTCTTTCTTTATT
CCTTCCTTGACCAAGGTACCATTGAGAAGAGTGTTGTTCAGTTTCCACGT
GAATGTTGGCTTTCTATTATTTATGTTGTTATTGAAGATCAGTCTTAGGC
CATGGTGGTCTGATAGGATACATGGTACAATTTCAATATTTTTGTATCTG
TTGAGGCCTGTTTTGTGACCAATTATATGATCAATTTTGGAGAAGGTCCC
ATGAGGTGCTGAGAAGAAGGTT

Query= MSMg01no540_i02.b1 MSMg01no540_i02.b1 CHROMAT_FILE:
MSMg01no540_i02.b1 PHD_FILE: MSMg01no540_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:47 2005
         (650 letters)



>mm_chr6_26731194_26732243
          Length = 1050

 Score = 1226 bits (634), Expect = 0.0
 Identities = 643/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagaattcatgaaaaccaaagaaccatggttgtcttagagcatttaaaatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagaattcatgaaaaccaaagaaccatggttgtcttagagcatttaaaatat 264

                                                                       
Query: 65  cttgcctggtcatggataaacacatgtatttggcaaaataatattattttaggtagaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgcctggtcatggataaacacatgtatttggcaaaataatattattttaggtagaaca 324

                                                                       
Query: 125 atttatggtttaatcataattactttcctagataagacatcatacaactatttatgttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttatggtttaatcataattactttcctagataagacatcatacaactatttatgttct 384

                                                                       
Query: 185 atgcattgttttgacagatatttatatgatatccttttctttttcttttctgcctttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcattgttttgacagatatttatatgatatccttttctttttcttttctgcctttcta 444

                                                                       
Query: 245 tatcccttcatgtctaatgccctaactatacataaaatcacatattttcatgtacgctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcccttcatgtctaatgccctaactatacataaaatcacatattttcatgtacgctgt 504

                                                                       
Query: 305 agactcattctctgacattttactcatcacttcatagatattaatatttccttagttttg 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agactcattctgtgacattttactcatcacttcatagatattaatatttccttagttttg 564

                                                                       
Query: 365 aaagtctgaaagttctcatgttattttaggaaattaacatagaagcttgagaactgtcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagtctgaaagttctcatgttattttaggaaattaacatagaagcttgagaactgtcag 624

                                                                       
Query: 425 tgaactattgttgtggatgtccattatactttcaggatagacattcatggttgtgctaag 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 tgaactattgttgtggatgtccattatactttcaggataaacattcatggttgtgctaag 684

                                                                       
Query: 485 cttattctaaattatatgcaaattctatatatttcatgaaattattaacataaatttgtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttattctaaattatatgcaaattctatatatttcatgaaattattaacataaatttgtt 744

                                                                       
Query: 545 aaatttggttattttaatttttcatttatttttgatataatatagtcatataacttcccc 604
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaatttggttattttaattttttatttatttttgatataatatagtcatataacttcccc 804

                                                         
Query: 605 cttcttttcctccctctgcataattctattcactcttttgaattcc 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttcttttcctccctctgcataattctattcactcttttgaattcc 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)