Query= MSMg01no540_m09.b1 MSMg01no540_m09.b1 CHROMAT_FILE:
MSMg01no540_m09.b1 PHD_FILE: MSMg01no540_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:10 2005
(665 letters)
>mm_chr6_106209837_106210901
Length = 1065
Score = 1075 bits (556), Expect = 0.0
Identities = 556/556 (100%)
Strand = Plus / Plus
Query: 1 atcaatctattgtgatcttgggaaggggactaacatctaagactaacatctaaagttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaatctattgtgatcttgggaaggggactaacatctaagactaacatctaaagttatt 260
Query: 61 cccttatgttctagaaacctgacaaaaccttactgtacgtcaagtctaagcaactattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttatgttctagaaacctgacaaaaccttactgtacgtcaagtctaagcaactattat 320
Query: 121 tgtaaagaagttcctgtggcaagacctgtgaagaccattatgttattaacttagtcatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaagaagttcctgtggcaagacctgtgaagaccattatgttattaacttagtcatct 380
Query: 181 tcacttacaatatagcttttctaagataatttatttttcttgttgggatacaggtggtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttacaatatagcttttctaagataatttatttttcttgttgggatacaggtggtta 440
Query: 241 tttaagacaatcaatttacatagaacaatttattcttttttcatgctgttaaagcaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaagacaatcaatttacatagaacaatttattcttttttcatgctgttaaagcaaatt 500
Query: 301 ggtatgtaattagatttatatactgaataatctcatttgcatatccaattaattcttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtatgtaattagatttatatactgaataatctcatttgcatatccaattaattcttcct 560
Query: 361 gttttaatttgctagggttgaattcacattagtagtaaaaataacacttaaattatcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttaatttgctagggttgaattcacattagtagtaaaaataacacttaaattatcaag 620
Query: 421 gcctcaaattttcctttgctgtaatttgttcaagatgttccatttaaaaattggtcccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctcaaattttcctttgctgtaatttgttcaagatgttccatttaaaaattggtcccca 680
Query: 481 gcattctttacaaaaccaactgggaattggtaaaatacttcactcaaaaatgcccttaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcattctttacaaaaccaactgggaattggtaaaatacttcactcaaaaatgcccttaac 740
Query: 541 caaaacacacagagtt 556
||||||||||||||||
Sbjct: 741 caaaacacacagagtt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_m09.g1 MSMg01no540_m09.g1 CHROMAT_FILE:
MSMg01no540_m09.g1 PHD_FILE: MSMg01no540_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:10 2005
(659 letters)
>mm_chr6_106393752_106394810
Length = 1059
Score = 1149 bits (594), Expect = 0.0
Identities = 645/664 (97%), Gaps = 5/664 (0%)
Strand = Plus / Minus
Query: 1 tgttctgctggattaatactgtatgaagaattgagagtcacattttgagccaagttatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgttctgctggattaatactgtatgaagaattgagagtcacattttgagccaagttatgg 661
Query: 61 gagaacatcagagcctgcaagaaaggacaggacatgttttgttttgtttt-gttttttt- 118
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 660 gagaacatcagagcctgcaagaaaggacaggacatgttttgttttgttttggtttttttt 601
Query: 119 ---ttgttgttgttcttgtttttaaagtagaaggattactttctgagaaatgtggtcagt 175
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 600 ttgttgttgttgttgttgtttttaaagtagaaggattactttctgagaaatgtagtcagt 541
Query: 176 tgttcaaatgatagcaagcaaatgcaagattccatcaggcgtaagttaactatgtgttat 235
||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 tgttcaaatcacggcaagcaaatgcaagattccatcaggcgtaagttaattatgtgttat 481
Query: 236 gattcaacatacaaggatcaataagtagataccatagatatcaataacagtggaatgaaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gattcaacatacaaggatcaataagtagataccatagatatcaataacagtggaatgaaa 421
Query: 296 agccgtggtattattgttcaagttttagaaagaagtgaaattgggaactatggcaaggag 355
|||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 420 agccatggtattattgttcaagttttagaatgaagtgaaattgggacctatggcaaggag 361
Query: 356 aggggttagaagctgagacagcttgttcatcaagtataatgacctgaattcagaacctca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggggttagaagctgagacagcttgttcatcaagtataatgacctgaattcagaacctca 301
Query: 416 gcatctatataaagatctgggcataacaatgcatgtgcctatagccctagcactgttggt 475
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 300 gcatctatataaagatctggccataacaatgcatgtgcctatagccccagcactgttggt 241
Query: 476 ggcaaagacaggagggtcactgtagctagccttccactagtcagcttcactcagtgagag 535
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 240 ggcaaagacaggagggtcactgtggctagccttccactagccagcttcactcagtgagag 181
Query: 536 actgtatcataagagaataaggcaaggagtaatgaaagtagaatatccaatatcctgaca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 actgtatcataagagaataaggcaaggagtaatgaaagtagaatatccaatatcctgaca 121
Query: 596 tagcctgcacacatgaatgtgtatataataccccccaccccaatacagctgtacacgcta 655
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 120 tagcctgcacacatgaatgtgtacataataccccccaccccaatacagctgtacacgcta 61
Query: 656 gtaa 659
||||
Sbjct: 60 gtaa 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
