BAC Information

Click to search

BAC

Clone NameMSMg01-540O11
Chromosome6 (Build37)
Map Location 25,196,761 - 25,197,258
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
Downstream geneGpr37, Pot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540O11.T7 (MSMg01no540_o11.b1)MSMg01-540O11.TJ (MSMg01no540_o11.g1)
ACCAG607046AG607047
length743734
length of high quality
(start - end)
518 (49 - 566)599 (77 - 675)
definitionCHROMAT_FILE: MSMg01no540_o11.b1 PHD_FILE: MSMg01no540_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:21 2005CHROMAT_FILE: MSMg01no540_o11.g1 PHD_FILE: MSMg01no540_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGACTTCAAGAATTTTAAGACTTCTTTGGAATATTGAGAGC
TGCTATGTTGGGAATCTGATAAAGATACTCAGGAGCTGGCTGGCATTTAG
AATGGTTATATTCAACTTGTTGCTACAGTACTGAAAACTGGACTCTAAGT
CAAACTTTGCAATTTATAAACCCCAGTGTGTAAATAATAATTGTATGTGT
TGACACTCTGAGCATGTTGTCATTAAACATTTAACTGGAGGCTTGCTTTC
TGTTTCAGAGGCTTAGTCCATTATCTTAAATGCAGGGAGCATGGCAGCAA
GCAACACAGTGGAGCAGTAGTTTAGAGGAACAACATGTTCAGCAACAGCA
AGGGGAGAGAGAGAGAGAGAGAGACAGAGAGAGGCAGAGAGAGACAGAGA
GAGACAGAGAGAGAGACAGAGAGACAGAGACAGACAGACAAAGAGACAGA
CAGAGAGACAGACAGAGACAGACAGAGAGAGACATAGACACAGAGACAGA
CTAGGCATGGCTTAGGGTTTTTGAAACCTCAAACACCACCCCCAGTGACA
CACTTCCTAACTAGGACACACATTCTAATCCTTCTCAACTTTTCAAGTAG
TGCTACTCCCTGATAACTAAGCATTCAAATATATGAGCCTATTTTGTGGG
TCAGGGGGCACTCTTAATTAAGCCACCATAGATGTCAAACCCT
NACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAACGAATGGCT
GAGAAACACCTGANAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCATTTCACACAAGTCAGAATGGCTAAG
ATCAAAAATTCAGTTGACAGCCAATACTGGCGAGGATGTGGTGAAAGAGG
AACACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCAGTTTCTCAGAAAATTGGACATGGTACTACTGGAGGAT
CCTCCAATACCTCTCCTGGGCATATATCGAGAAGATCTTCCAACTAGGAA
GAAAGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATACCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGG
ATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCACAAAAGAACTCAAATGATATGTACTCACTGATA
AGTGGATATTAGTCCAGAAACTTAGAATACCCAGGATATAAGTTACAATT
TGTGAAACACATGAAACTCAAGAAGAACGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_o11.b1 MSMg01no540_o11.b1 CHROMAT_FILE:
MSMg01no540_o11.b1 PHD_FILE: MSMg01no540_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:21 2005
         (518 letters)



>mm_chr6_25196557_25197474
          Length = 918

 Score =  878 bits (454), Expect = 0.0
 Identities = 492/514 (95%), Gaps = 16/514 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgacttcaagaattttaagacttctttggaatattgagagctgctatgttggg 64
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgacttcaagaaatttaagacttcattggaatattgagagctgctatgttggg 264

                                                                       
Query: 65  aatctgataaagatactcaggagctggctggcatttagaatggttatattcaacttgttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatctgataaagatactcaggagctggctggcatttagaatggttatattcaacttgttg 324

                                                                       
Query: 125 ctacagtactgaaaactggactctaagtcaaactttgcaatttataaaccccagtgtgta 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ctacagtcctgaaaactggactctaagtcaaactttgcaatttataaactccagtgtgta 384

                                                                       
Query: 185 aataataattgtatgtgttgacactctgagcatgttgtcattaaacatttaactggaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataataattgtatgtgttgacactctgagcatgttgtcattaaacatttaactggaggc 444

                                                                       
Query: 245 ttgctttctgtttcagaggcttagtccattatcttaaatgcagggagcatggcagcaagc 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 ttgctttctgtttcagaggcttagtccactatcttaaatgcagggagcatggcagcaagc 504

                                                                       
Query: 305 aacacagtggagcagtagtttagaggaacaacatgttcagcaacagcaaggggagagaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacacagtggagcagtagtttagaggaacaacatgttcagcaacagcaaggggagagaga 564

                                                                       
Query: 365 gagagagagagacagagagaggcagagagagacagagagagacagagagagagacagaga 424
           ||||||||    ||||||||||||||||||||||||||||||||||||||          
Sbjct: 565 gagagaga----cagagagaggcagagagagacagagagagacagagaga---------- 610

                                                                       
Query: 425 gacagagacagacagacaaagagacagacagagagacagacagagacagacagagagaga 484
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 --cagagacagacagacaaagagacagacagagagacagacagagacagacagagagaga 668

                                             
Query: 485 catagacacagagacagactaggcatggcttagg 518
           | ||||||||||||||||||||||||||||||||
Sbjct: 669 cttagacacagagacagactaggcatggcttagg 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)