Query= MSMg01no541_a07.b1 MSMg01no541_a07.b1 CHROMAT_FILE:
MSMg01no541_a07.b1 PHD_FILE: MSMg01no541_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:30 2005
(589 letters)
>mm_chr6_53807580_53808568
Length = 989
Score = 1087 bits (562), Expect = 0.0
Identities = 583/590 (98%), Gaps = 1/590 (0%)
Strand = Plus / Plus
Query: 1 accagtgcctcgagtgtttttttaattctgttgtactggctgcaatgaatgagctttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 accagtgcctcgagtgtttttttaattctgttgtactggctgcaatgaatgagttttaaa 260
Query: 61 ttcatgttttccccatggaagttgttgtcctctggaaaccattttgccaaagaacagaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttcatgttttccccatggaagttgttgtcctctggaaaccattttgccaaagaaaagaaa 320
Query: 121 tgatcttttctggggcgattcagacacagagctgggagtgattctggcagaatgagcgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatcttttctggggcgattcagacacagagctgggagtgattctggcagaatgagcgca 380
Query: 181 ggagggaaaggatattagcaattggaaaatgggttcttgccagaggctctgtgtgatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagggaaaggatattagcaattggaaaatgggttcttgccagaggctctgtgtgatgac 440
Query: 241 attagaatcgacatgatggaattagactgggggttctctgcgggtctggttaggctcaga 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 attagaatcgacatgatggaattagactgggggttctctgcgggtctgcttaggctcaga 500
Query: 301 gcatccaataacccactgaggcggctgcaagacagctatggccgccctttattatctcgg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gcatccaataacccactgaggcggctgcaagacagctatggccaccctttattatctcgg 560
Query: 361 gaatggaaatgttattttgaattccatggtttggggagattgaccagattagctcttgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaatggaaatgttattttgaattccatggtttggggagattgaccagattagctcttgat 620
Query: 421 tctaagcgatggcaactctgctgtcacacctgttccagtccctgtgtacagtacctttct 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 tctaagcgatggcaactctgctgtcacacctgttccagtccctctgtacagtacctttct 680
Query: 481 tcacttttaaaaaggtccctagaacagcctcattgctctagggaaagaggaaggaaggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacttttaaaaaggtccctagaacagcctcattgctctagggaaagaggaaggaaggga 740
Query: 541 tgaggtaggaagaagaggggaaagggagaaaaggaaagaagaa-ggatgg 589
|||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 741 tgaggtaggaagaagaggggaaagggagaaaaggaaggaagaaaggatgg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_a07.g1 MSMg01no541_a07.g1 CHROMAT_FILE:
MSMg01no541_a07.g1 PHD_FILE: MSMg01no541_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:30 2005
(669 letters)
>mm_chr6_53967791_53968859
Length = 1069
Score = 1062 bits (549), Expect = 0.0
Identities = 565/571 (98%), Gaps = 2/571 (0%)
Strand = Plus / Minus
Query: 1 aaagaagccctccccacccctgggaattccttgaattctactctagaaaatgggcttctg 60
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 573 aaagaagccctccccacccctggggattccttgaattccactctagaaaatgggcttctg 514
Query: 61 tggattcttcaaggtcagacataaagatcaaaaggactcacaactcttggtccctcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tggattcttcaaggtcagacataaagatcaaaaggactcacaactcttggtccctcctga 454
Query: 121 cagccccagtgtgggggcaggaagagtttcagacagcaaaggatcaagtgtggtcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagccccagtgtgggggcaggaagagtttcagacagcaaaggatcaagtgtggtcagaag 394
Query: 181 gaagggaggaactttcctgggtcaaatgtgtcaagtaagccttgaggacaaagccagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaagggaggaactttcctgggtcaaatgtgtcaagtaagccttgaggacaaagccagctg 334
Query: 241 cacatggtgataggacacagagagccagaaccagcccaaggtcccgagtggcctccttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cacatggtgataggacacagagagccagaaccagcccaaggtcccgagtggcctccttaa 274
Query: 301 tcttctattttgttatagattaaagataacagaacaataagatagttgcatttatttagt 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcttctattttgttatagatgaaagataacagaacaataagatagttgcatttatttagt 214
Query: 361 taacaaaacattgtatgtatacacatatacatacacatatacatgtactttttgttttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 taacaaaacattgtatgtatacacatatacatacacatatacatgtactttttgttttat 154
Query: 421 gatataggacacaaagcatcgtataacatgcattgtttaagataacaattaaaacatcat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aatataggacacaaagcatcgtataacatgcattgtttaagataacaattaaaacatcat 94
Query: 481 gat--agagagagagatgaaaatgccatggttacattctggaagacaaaatacttgatac 538
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gatagagagagagagatgaaaatgccatggttacattctggaagacaaaatacttgatac 34
Query: 539 atgaagaagtgactcaattgggtgatccatt 569
|||||||||||||||||||||||||||||||
Sbjct: 33 atgaagaagtgactcaattgggtgatccatt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
