Query= MSMg01no541_f01.b1 MSMg01no541_f01.b1 CHROMAT_FILE:
MSMg01no541_f01.b1 PHD_FILE: MSMg01no541_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:55 2005
(479 letters)
>mm_chr6_66972412_66973290
Length = 879
Score = 648 bits (335), Expect = 0.0
Identities = 443/529 (83%), Gaps = 78/529 (14%)
Strand = Plus / Plus
Query: 5 gaattccctaaatctgttttttagtcacccttttctcatccttgctacaacccctcttat 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattccctaaagctgttttttagtcacccttttctcatccttgctacaacccctcttat 234
Query: 65 actttttgtgactctgaagatgactgtgttggaaatgatagatagtgggatttagtaaaa 124
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 235 actttttgtgactctgaagatgactgtgttggaaat----gatagtg------------- 277
Query: 125 gtgaatttttaaagagaaaggagatgaccaaactgaaaggggtggcagaacggcaggtga 184
||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 278 -------tttaaagagaaaggagatgaccaaactaaaaggggtggcagaacgtcaggtga 330
Query: 185 gtgtacactaccctacagtatggacaggaggccc-------------------------- 218
||||||||||||||||||||||||||||||||||
Sbjct: 331 gtgtacactaccctacagtatggacaggaggcccctgccaaaaatgccaggtaagtatac 390
Query: 219 ----------------------------ctgccaagaatggcactagtagcccgagatgc 250
||||||||||||||||||| ||||||||||||
Sbjct: 391 actgcccaaagttgcaggcaggaaatatctgccaagaatggcactagcagcccgagatgc 450
Query: 251 atgtcactcagtgtttcaacttttctccacttgtaccatcctcagcttctccctgtcacg 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 451 atgtcactcagtgtttcaacttttctccacttgtaccatcctcagcttctccctgtcaag 510
Query: 311 cggattacacagagacacaagagtagccactccagccttttcactgaaggataggcaatc 370
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 511 cggattacacagagacacaagaatagtcactccagccttttcactgaaggataggcaatc 570
Query: 371 ttacacccctatccgtgtgtctgtctcggtcttgtcttccagctctaagcctatttgtag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttacacccctatccgtgtgtctgtctcggtcttgtcttccagctctaagcctatttgtag 630
Query: 431 aatctgacccatcaccagctctgtctttgaggagccttggtatggtcat 479
|||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 631 aatctgacccatcaccagctttgtctttgaggagccttggtatggtcat 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_f01.g1 MSMg01no541_f01.g1 CHROMAT_FILE:
MSMg01no541_f01.g1 PHD_FILE: MSMg01no541_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:55 2005
(551 letters)
>mm_chr6_67170399_67171349
Length = 951
Score = 986 bits (510), Expect = 0.0
Identities = 534/542 (98%)
Strand = Plus / Minus
Query: 1 actctatagatcaggctggcctcaaactgacagagatccacctcccagtgctgggattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 actctatagatcaggctggcctcaaactgacagagatccacctcccagtgctgggattaa 483
Query: 61 aggcatgcaccacacttcctggcttgcagatccttattgtgaattcctatctggttgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aggcatgcaccacacttcctggcttgcagatccttattgtgaattcctatctggttgaag 423
Query: 121 gttgacctctgtgtctgcagcatgtgggctgtttgctgaacagacatagaatttagggat 180
||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct: 422 gttgacctctgtgtctgcagcatgtggtctgtgtgctgaacagacatagaacttagggat 363
Query: 181 gctagcttgtttcagagattagactggattacattagataagacatctcatacactttta 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gctagcttgtttcagagatcagactggattacattagataagacatctcatacactttta 303
Query: 241 aatatctatctgtctgttttaggattttattgctgtgaaaagacaccatgatcaaggcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aatatctatctgtctgttttaggattttattgctgtgaaaagacaccatgatcaaggcaa 243
Query: 301 cttttacgatcaaggcaactcttataaaggacaacatttaattaggggtggcttacagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttttacgatcaaggcaactcttataaaggacaacatttaattaggggtggcttacagct 183
Query: 361 tctgagatttagtccattactgtcatggtaggaaacatggcagagagcaggcaggcatgg 420
|||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 182 tctgagatgtagtccattactgtcatggcaggaaacatggcagagagaaggcaggcatgg 123
Query: 421 tcctgaagaaggagctgatagttttacatcttgatcagaagacatcagaaggagattgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tcctgaagaaggagctgatagttttacatcttgatcagaagacatcagaaggagattgta 63
Query: 481 tctcatactggaattagcttgagcacatataacctcaaagcctgccttcacagtgacaca 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcttatactggaattagcttgagcacatataacctcaaagcctgccttcacagtgacaca 3
Query: 541 ct 542
||
Sbjct: 2 ct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
