Query= MSMg01no542_g12.b1 MSMg01no542_g12.b1 CHROMAT_FILE:
MSMg01no542_g12.b1 PHD_FILE: MSMg01no542_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:26 2005
(686 letters)
>mm_chr6_54228968_54230052
Length = 1085
Score = 1224 bits (633), Expect = 0.0
Identities = 669/681 (98%), Gaps = 3/681 (0%)
Strand = Plus / Plus
Query: 7 gaattctaggcagattatgcccagtataatagtcttggacaaacattcttcctgtctgga 66
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctaggcagaccatgcccagtataatagtcttggacaaacattcttcctgtctgga 266
Query: 67 gtattttcttcctgtctggggtattttagttactgccctcaactttgaaaaaaaaaaa-g 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 267 gtattttcttcctgtctggggtattttagttactgccctcaactttgaaaaaaaaaaaag 326
Query: 126 ttctttctctttaaaaggtatttttgaaaaaaaaaatcaatagatttcagaaaataaaaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctttctctttaaaaggtatttttgaaaaaaaaaatcaatagatttcagaaaataaaaa 386
Query: 186 ggactgcttggtgacatttttaaggtgtggggtctttcactgagatggcagatgacagac 245
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggctgcttggtgacatttt-aaggtgtggggtctttcactgagatggcagatgacagac 445
Query: 246 atcaaccccaacagtgtgagcacacccgcagcactcgctgcggcctgttctctcctcagg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcaaccccaacagtgtgagcacacccgcagcactcgctgcggcctgttctctcctcagg 505
Query: 306 ttccaaaagaaaacagaataacacaccagccacaaaaataaacagtggcccatcctcaaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttccaaaagaaaacagaataacacaccagccacaaaaataaacagtggcccatcctcaaa 565
Query: 366 aggaaattgggcagtgggcctaaaataatgtttgtctagctcaacgttcccctcgttcgg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aggaaattgggcagtgggcctaaaataatgtttgtctagctcaacgttcccctcgttcgg 625
Query: 426 attttattttacttgtgtgggctaagcaaggacagaaagtgacttgttccttgtggagtc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attttattttacttgtgtgggctaagcaaggacagaaagtgacttgttccttgtggagtc 685
Query: 486 tccctgcatttgtttgcttttaggacggggctgataagcactgtatgtatgtgtgcttgg 545
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tccctgcatttgtttgctcttaggacggggctgataagcactgtatgtatgtgtgcttgg 745
Query: 546 tgtgctggaggacgttgtaggctgccggcagatgtgaagcttggaatcatgggacgagca 605
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 746 tgtgctggaggacgttgtaggctgccggcagacgtgaagcttggaatcatgagacgagca 805
Query: 606 gaccctcatttctggaagcacttgggagttgtagtttggcccctgcctgtgtggtgagag 665
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 806 gaccctcatttttggaagcacttgg-agttgtagtttggcccctgcctgtgtggtgtgag 864
Query: 666 cactgaagctgcttccctcac 686
||||||| |||||||||||||
Sbjct: 865 cactgaacctgcttccctcac 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1085
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1075
Effective search space: 726700
Effective search space used: 726700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_g12.g1 MSMg01no542_g12.g1 CHROMAT_FILE:
MSMg01no542_g12.g1 PHD_FILE: MSMg01no542_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:26 2005
(584 letters)
>mm_chr6_54394514_54395497
Length = 984
Score = 1060 bits (548), Expect = 0.0
Identities = 576/586 (98%), Gaps = 2/586 (0%)
Strand = Plus / Minus
Query: 1 tttacaatgctgaagattgtaaaag--gtgtggtggtggtgggggagaagcaagcaccag 58
||||||||||||||||||||||||| ||||||||| || ||||| | | |||||||||
Sbjct: 752 tttacaatgctgaagattgtaaaaggtgtgtggtggggggggggggggtggaagcaccag 693
Query: 59 aaatttcaactgccaattagtaatgaccaaagcaataatgcaaaattgcaaggagtctgt 118
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaatttcaactgccaattagtactgaccaaagcaataatgcaaaattgcaaggagtctgt 633
Query: 119 ggtagatcaattctacaacaccagtgctcaggaagtggaggcaagaaaggtacatgttcg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggtagatcaattctacaacaccagtgctcaggaagtggaggcaagaaaggtacatgttcg 573
Query: 179 agaccagcctgagctctacagtgagcctttcaagcaagcaaggaaacaaacaaaaccatt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 572 agaccagcctgagctctacagtgagcctttcaagcaagcaaggaaacaaacaaaactatt 513
Query: 239 gtaggccacccaggggagactggacagagctggggttttcattgtggaactgcccgccca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtaggccacccaggggagactggacagagctggggttttcattgtggaactgcccgccca 453
Query: 299 catcagacctattagcactttaagcataatgccaaggctgggaacatggctgagtactga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 catcagacctattagcactttaagcataatgccaaggctgggaacatggctgagtactga 393
Query: 359 agtgcctgacacaaaggcacgaggacccgagtccagatccccagcacctgcataaaagtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtgcctgacacaaaggcacgaggacccgagtccagatccccagcacctgcataaaagtt 333
Query: 419 ggactcacatctctagccccatcactgactgacagtggtggggagaggcaggtccctgga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggactcacatctctagccccatcactgactgacagtggtggggagaggcaggtccctgga 273
Query: 479 gctcaccggccagctagactagctgaactgagggactctaggttgtgagaggccctgtct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gctcaccggccagctagactagctgaactgagggactctaggttgtgagaggccctgtct 213
Query: 539 caaactaggaggtagctcgaaaatgaggaagacacctgaagctgac 584
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 caaactaggaggtagctcgaaaatgaggaagacacctgaagctgac 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
