Query= MSMg01no542_j10.b1 MSMg01no542_j10.b1 CHROMAT_FILE:
MSMg01no542_j10.b1 PHD_FILE: MSMg01no542_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:40 2005
(656 letters)
>mm_chr6_35141273_35142324
Length = 1052
Score = 1220 bits (631), Expect = 0.0
Identities = 646/653 (98%), Gaps = 4/653 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttggatctcatgtaatgttagacacacatgtggaatacagacatatatgcagg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ggaattcttggatctcaggtaatgttagacacacatgtggaatacagacatatatgcagg 876
Query: 64 caaaacattcgcacataaaataagtcacctaaaaacttttaaaggaagaaaatcaatgca 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 caaaacactcgcacataaaataagtcacctaaaaacttttaaaggaagaaaatcaatgca 816
Query: 124 ttgctaggtacagtgagtggcagagccagttctctccaaccttccttccttacctgttac 183
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tcgctaggtac----agtggcagagccagttctctccaaccttccttccttacctgttac 760
Query: 184 atccggtagctgggatatccccctcaacgccagggcccaggcaagcctaacagtggcctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atccggtagctgggatatccccctcaacgccagggcccaggcaagcctaacagtggcctg 700
Query: 244 cagtccaggaagcttccaaggctgagagtcctggaggcgagagtgaattgtcgaaacgta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cagtccaggaagcttccaaggctgagagtcctggaggcgagagtgaattgtcgaaacgta 640
Query: 304 ctgtctctctgtcaacagtggaaggtggtgaatcatatctgaaaacacaaaattacatca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctgtctctctgtcaacagtggaaggtggtgaatcatatctgaaaacacaaaattacatca 580
Query: 364 cttcaccaaaaaagagcagaaataaattctcacatccgtcacacatggatatctaaaagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttcaccaaaaaagagcagaaataaattctcacatccgtcacacatggatatctaaaagt 520
Query: 424 cataaacacagcattttcaaaaggaatgatgactaattaacatcattatttgatataaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cataaacacagcattttcaaaaggaatgatgactaattaacatcattatttgatataaca 460
Query: 484 aaatatctgtattgctgttaaagtattatatgcataaaaactaaaaacaacaaccctaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaatatctgtattgctgttaaagtattatatgcataaaaactaaaaacaacaaccctaaa 400
Query: 544 tttcagttaacaacttccaataagtttcatagacagcagaaattagaaaaagaagcactc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tttcagttaacaacttccaataagtttcatagacagcagaaattagaaaaagaagcactc 340
Query: 604 actgttttttctatacaggaattctaaaatataaataaatgctctctaaagat 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 actgttttttctatacaggaattctaaaatataaataaatgctctctaaagat 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1052
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1042
Effective search space: 673132
Effective search space used: 673132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_j10.g1 MSMg01no542_j10.g1 CHROMAT_FILE:
MSMg01no542_j10.g1 PHD_FILE: MSMg01no542_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:40 2005
(649 letters)
>mm_chr6_34946213_34947261
Length = 1049
Score = 1151 bits (595), Expect = 0.0
Identities = 639/661 (96%), Gaps = 12/661 (1%)
Strand = Plus / Plus
Query: 1 accatctggcgggagagaaagacattaatcaaggaagtgtgaggaccactgcacgctctc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 accatctggcgggagagaaagacattaatcaaggaagtgcgaggaccactgcacgctctc 260
Query: 61 ggctgagatgagggctagagttctctctcttgaactgggtcgcagcctcaagtcgcggac 120
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 261 ggctgagatgagggctagagttctcgctcttgaactgggttgcagcctcaagtcgtggac 320
Query: 121 ctggatgggagggtgctgatgaacttgccaatagtaaaaggacccaaaaatgaattcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggatgggagggtgctgatgaacttgccaatagtaaaaggacccaaaaatgaattcaaa 380
Query: 181 attaaaatcgttgtgaatcagaggaatttccattggtgttcaccgtccttggctccgaga 240
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct: 381 attaaaatcgttgtgaatcagaggaatttccattggtgttcatcgcccttggctccaaga 440
Query: 241 gtagaacatgtcactttgcactgatgccatcatgccagccactgaatgctgactgaagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaacatgtcactttgcactgatgccatcatgccagccactgaatgctgactgaagtg 500
Query: 301 cctggctgagattcaaaaagtgaaggctgtttactgcacacacagggttctctgctctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggctgagattcaaaaagtgaaggctgtttactgcacacacagggttctctgctctta 560
Query: 361 cagaaacacggtagcttaactatggaaaggacgttagcatttccctaccattgctcctca 420
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 cagaaacacagtagcttaactatggaaaggacattagcatttccctaccattgctcctca 620
Query: 421 gcacacaagcatcaggttcccagacctttggattgtattgtgttagagtgtttgatttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacacaagcatcaggttcccagacctttggattgtattgtgttagagtgtttgatttta 680
Query: 481 aaagctgctacttgagaggcctggcaagatggctcagtgcataaaggcag---------- 530
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagttgctacttgagaggcctggcaagatggctcagtgcataaaggcaggtgtccccac 740
Query: 531 --ctgacaccctgagttcaatccccaagcaggctccacacagtggaaagtgagaattgac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acctgacaccctgagttcaatccccaagcaggctccacacagtggaaagtgagaattgac 800
Query: 589 tcttgcatgctgttctggcctcctcttatggggtgtggcgtgtgggctcctatgagcaca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcttgcatgctgttctggcctcctcttatggggtgtggcgtgtgggctcctatgagcaca 860
Query: 649 c 649
|
Sbjct: 861 c 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
