Query= MSMg01no542_l23.b1 MSMg01no542_l23.b1 CHROMAT_FILE:
MSMg01no542_l23.b1 PHD_FILE: MSMg01no542_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:53 2005
(587 letters)
>mm_chr6_144205893_144206879
Length = 987
Score = 1065 bits (551), Expect = 0.0
Identities = 575/583 (98%)
Strand = Plus / Plus
Query: 5 gaattcatttgttcggggaaatcacggtattcatccatccgtttatcttgttgtaaacag 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcatttgttcggggaaatcacggtattcatccatctgtttatcttgttgtaaacag 264
Query: 65 gcatttactgaaggcccactgtgtgtggtacacagatcaagtcactggtgatccaaggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatttactgaaggcccactgtgtgtggtacacagatcaagtcactggtgatccaaggtt 324
Query: 125 gactgaaaggtgactgcattcttgtggttggtatagtccaggccaagatacagaaagcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gactgaaaggtgactgcattcttgtggttggtatagtccaggccaagatacagaaagcaa 384
Query: 185 tcacaaaatgcatggctctgtgagactctaacaccattaaaaaaaaaaatgtcctggcct 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 tcacaaaatgcatggctctgtgagactctaacaccattgaaaaaaaaaatgtcctggcct 444
Query: 245 gataccaagattgaccctttaaaggaactgggaggaccactcagaggcaagaaggctttt 304
||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 445 gataccaggattgaccctttaaaggagctgggaggaccactcagaggcaggaaggctttt 504
Query: 305 cttctcaagcagaaagtcagaacatgactccaacttactgcaatgagcaacgcagggcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 cttctcaagcagaaagtcagaacatgactccaacttactgcaatgagcaacacagggcag 564
Query: 365 agagcctcttaggtgttgagcaggctgccacaagctaactgttgaggaaagcatgtgacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagcctcttaggtgttgagcaggctgccacaagctaactgttgaggaaagcatgtgacc 624
Query: 425 agagaactcagttgactggagagagagcaacacaaaggggaccaagagggtcatgtggat 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 agagaactcagttgactggagagagagcaacacaaagaggaccaagagggtcatgtggat 684
Query: 485 catcaggcatagaagcgactgtataacccatgtctgggagcctggtgccatccaaagaga 544
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catcgggcatagaagcgactgtataacccatgtctgggagcctggtgccatccaaagaga 744
Query: 545 catccaggaaccctctgcagccctgtgtgtggacatggtcgtg 587
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catccaggaaccctctgcagccctgtgtgtggacatggtcgtg 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_l23.g1 MSMg01no542_l23.g1 CHROMAT_FILE:
MSMg01no542_l23.g1 PHD_FILE: MSMg01no542_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:53 2005
(631 letters)
>mm_chr6_144330660_144331690
Length = 1031
Score = 1114 bits (576), Expect = 0.0
Identities = 615/634 (97%), Gaps = 11/634 (1%)
Strand = Plus / Minus
Query: 1 agttaacgagatgctgggagatcatgttgtttctgtatttatctgatgggtcctcagctc 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 811 agttaacgagatgctgggagatcatgtcatttctgtatttatctgatgggtcctcagctc 752
Query: 61 actgggaattcattgggtttttgaaccaagcaaaggttatattagttgctggaattaacc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 751 actgggaattcattgggttttttaaccaagcaaaggttatattagttgctggaattaacc 692
Query: 121 aggaaagcaatgctagtaaattcaaaataaataaatttattaaatattttctcttaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aggaaagcaatgctagtaaattcaaaataaataaatttattaaatattttctcttaaaaa 632
Query: 181 tagactgcaacaaaatgagcgttctccttcaggattaaatcgtttttaatcattatctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tagactgcaacaaaatgagcgttctccttcaggattaaatcgtttttaatcattatctgg 572
Query: 241 tttggaagagatagttgcatccatagtattaatgtaaaattcaaaaggctagggagaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tttggaagagatagttgcatccatagtattaatgtaaaattcaaaaggctagggagaggc 512
Query: 301 aggaagcatggcgttctggcgtgtgaagcatcggtttctcatcgtgtgcccttgggtctc 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aggaagcatggcgttctagcgtgtgaagcatcggtttctcatcgtgtgcccttgggtctc 452
Query: 361 atggaacgcattactattattctccacaggtttggtgaggatgagagtgggctgatataa 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atgggacgcattactattattctccacaggtttggtgaggatgagagtgggctgatataa 392
Query: 421 tgggctgagggtagctcatgagggtaactca---tgtttgcttacagacaccaggtccta 477
||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 391 tgggctgagggtagctcatga--------catagtgtttgcttacagacaccagatccta 340
Query: 478 catacgactcctagaaccaaactgtatgaatctgtgggcgaatgggtttcactgaaggtc 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 339 catacgactcctagaaccaaactgtacgaatctgtgggcgaatgggtttcactgaaggtc 280
Query: 538 aagtgattatgccacattgaatttcacatgaatgccagtgaacttactgaagaataaatg 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 279 aagtgattatgccacattgaattccacatgaatgccagtgaacttactgaagaataaatg 220
Query: 598 gatgaatacttaaacatatgtgtttatggatgac 631
||||||||||||||||||||||||||||||||||
Sbjct: 219 gatgaatacttaaacatatgtgtttatggatgac 186
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
