BAC Information

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BAC

Clone NameMSMg01-542P02
Chromosome6 (Build37)
Map Location 66,392,837 - 66,393,509
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542P02.T7 (MSMg01no542_p02.b1)MSMg01-542P02.TJ (MSMg01no542_p02.g1)
ACCAG608596AG608597
length777767
length of high quality
(start - end)		673 (46 - 718)672 (78 - 749)
definitionCHROMAT_FILE: MSMg01no542_p02.b1 PHD_FILE: MSMg01no542_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:08 2005CHROMAT_FILE: MSMg01no542_p02.g1 PHD_FILE: MSMg01no542_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCTTAGCTCTGAGCCCCATTTTTTAATGGGATTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTGATTATATATATATTGGATATTAGTTC
CCTATCTGATTTAGGATAGGTAAAGAGCCTTTCCCAATCTCTTATTGACA
GTGTCTTTTACCTTACAGAGGCTTTGCAATTTTATGAGTTCCCATTTGTC
AATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTT
CCCCTGTGCCCATATCTTAGAGGCTTTTCCCCACTTTCTCCTCTATAAGT
TTCACTGTCTCTGGTTCTATGTGGAGTTTCTTGATCCACTTAGATTTGAC
CTTAGTACAAGGAGATAGGAATGGATCAATCAATTCGCATTCTTCTACAT
GATAACCGCCAGTTATACCAGCATTATTTGTTGAAAATGCTGTCTCTTTT
CCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTTCTCTG
TTGCTATACGAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAG
CTTGAGGTCAGGAATGGTGATTCCTCTAGAGGTTCTTTTATCCTTGAGAA
GAGAGTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAGATT
TCCCTTTTCTATTCATTGNAGAAATGN

NCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCAGAGGGATTAAAGGTAAA
AGCTTAGCCACACCCTAACTAGAAATAGGTTCAAATACCCTGTAACACTT
AGCTAGGTAGTTGATTGGTCCCACTGGCTTAATGTATGTTTTGACTACCT
TGGAATGCATGGCTTTTAGCCAGGTTAGAGAAATATCTGTCCTATATTAG
TAATATAATTTCTGATGTGTCTCAAATTGCCAGGCATTCATAGTGGACAA
TAAAATTCAATAAAGTTTTTTTTATAACAAACATATTACTTTTAGTAGAA
AATTTTTTATCTCATTAATGTGTATGACAAAGCAGAAATTTAATATTTTG
AAATTTAAATGCATCACGTTTGACATTTTCATGATTAAAATAATTATATA
TCCTTTATCTATATTTAACATTTCTTCCTATACAAATATATGTACATTTG
TTTTGTGAAATCTTTATACTTAGAGGCAGTATCTAATAATTTGTAGATAA
TGTACTTGCTAAAAACAGACAAACAAAAAATTAATAGCTGCAATGAAACC
TTCCATCTGAGAATACAAGGTCTTTATGTCCTGGATTCTCAGGGCTCTTA
AACTACATATCACAGCATCAGGCTAAGGGAGGCAAGCATGCCAATGGAAG
CTAATGCCTTTGGAGTGTTCTTACAGATCCATATCCCCACAAATACAGAT
CACCCAAGAATACACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_p02.g1 MSMg01no542_p02.g1 CHROMAT_FILE:
MSMg01no542_p02.g1 PHD_FILE: MSMg01no542_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:08 2005
         (672 letters)



>mm_chr6_66392583_66393655
          Length = 1073

 Score = 1210 bits (626), Expect = 0.0
 Identities = 662/674 (98%), Gaps = 3/674 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccagagggattaaaggtaaaagcttagccacaccctaactagaaataggttcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 927 ctgccagagggattaaaggtaaaagcttagccacaccctaactagaaatagtttcaaata 868

                                                                       
Query: 61  ccctgtaacacttagctaggtagttgattggtcccactggcttaatgtatgttttgacta 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 867 ccctgtaacacttagctaggtagttgattggtcccactggcttaatgtttgttttgacta 808

                                                                       
Query: 121 ccttggaatgcatggcttttagccaggttagagaaatatctgtcctatattagtaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ccttggaatgcatggcttttagccaggttagagaaatatctgtcctatattagtaatata 748

                                                                       
Query: 181 atttctgatgtgtctcaaattgccaggcattcatagtggacaataaaattcaataaag-t 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 747 atttctgatgtgtctcaaattgccaggcattcatagtggacaataaaattcaataaagtt 688

                                                                       
Query: 240 tttttttataacaaacatattacttttagtagaaaattttttatctcattaatgtgtatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 687 tttttttataacaaacatattacttttagtagaaaattttttatctcattaatgtgtgtg 628

                                                                       
Query: 300 acaaagcagaaatttaatattttgaaatttaaatgcatcacgtttgacattttcatgatt 359
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 627 acaaagcagaaatttaatattttggaatttaaatgcatcacatttgacattttcatgatt 568

                                                                       
Query: 360 aaaataattatatatcctttatctatatttaacatttcttcctatacaaatatatgtaca 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaaataattatatattctttatctatatttaacatttcttcctatacaaatatatgtaca 508

                                                                       
Query: 420 tttgttttgtgaaatctttatacttagaggcagtatctaataatttgtagataatgtact 479
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 507 tttgttttgtgaaatctttatacttagagccagtatctaataatttgtagataatgtact 448

                                                                       
Query: 480 tgctaaaaacagacaaacaaaaaattaatagctgcaatgaaaccttccatctga-gaata 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 447 tgctaaaaacagacaaacaaaaaattaatagctgcaatgaaaccttccatctgatg-ata 389

                                                                       
Query: 539 caaggtctttatgtcctggattctcagggctcttaaactacatatcacagcatcaggcta 598
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caaagtctttatgtcctggattctcagggctcttaaactacatatcacagcatcaggcta 329

                                                                       
Query: 599 agggaggcaagcatgccaatggaagctaatgcctttggagtgttcttacagatccatatc 658
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 agggaggcaagcatgccaatggaagctaatgcctttgcagtgttcttacagatccatatc 269

                         
Query: 659 cccacaaatacaga 672
           ||||||||||||||
Sbjct: 268 cccacaaatacaga 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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