BAC Information

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BAC

Clone NameMSMg01-543D17
Chromosome6 (Build37)
Map Location 115,804,097 - 115,804,721
singlet/doubletsinglet
Overlap geneIft122
Upstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4
Downstream geneRho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543D17.T7 (MSMg01no543_d17.b1)MSMg01-543D17.TJ (MSMg01no543_d17.g1)
ACCAG608817AG608818
length764773
length of high quality
(start - end)		712 (46 - 757)633 (74 - 706)
definitionCHROMAT_FILE: MSMg01no543_d17.b1 PHD_FILE: MSMg01no543_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:32 2005CHROMAT_FILE: MSMg01no543_d17.g1 PHD_FILE: MSMg01no543_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGATTAAAGGTGTATACCACCATGCCTGGGCCTAAACTTTTCA
TTATCACTGTTCTTCAAGATCTGGATCACAAGTGCACTACTCCATTTCTG
GATTATAGTTAATTTCATATTAAAAGTCAAAACTATTCCTTGTTCAACTG
CAAAACACAAATAAGCTTAACTGGGTAAGCACAGCTTCCTTATCCTCTTT
ATCTCCTTGAACACAGGATTCAGCTCCATTTTTCTTTCTGGTGCCCCTTT
ATTATTTCTTGAACCATACATTTTATATTTTTTTTCTTTTTAAGCTTGCT
ATGCTTGATCAAAGTGTTCTTTAGTTAGTCATGAGACTAAACCAGAGAAC
AAAATCTCTGTTGGGCTTTTTTTTTTTTTTAGATTTCCTTTGCCAATGCA
ATTAATATAAATCTCTATACCTTAGCCTCAGGTAGATTCTTCAAATAAGG
GCAAAAAGCAGTCACATTCTTCAAAATACCACAGAAATAGTCTGTAGGCC
ACATACTGAAATTCTTCTCCACTGAAATCTCTTGGGCCAGGTCTGGACAG
TTCAAATCACTCTGAGCTACAAAGTCGTCCATATTCCTACTAGAATTTCT
CATTAAGCCCCACTTAAAGCATTCCACTGCTTTCCAAATCTAGAGTCCCA
AAATCTACATTCTTCCAAACAAAAGCTTGGTCAGGCTTATCACAGCAATA
CCCAAGTCCCTGGT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTATGTTGACCAAGCTGGCGTTGAAC
TCACAAAGATACATATGCTTCTAGCTCCCCAGTGCCGGGATTAAAAATTT
TCGAGCAGGAACAAACAAAACGGTGTGAGTAACTTGCATCTCGGTTCTGA
GCATTTCCACCTGAGCTGAGATCTACTGTGTCTGAAACAGGACATTTCCA
TGTACGGTCAGAGAAACATGTAAGATGCGATCAAGTCAAGACATCTCTTG
ATTGGGAAGTTTGAGGAGTATTTTCAAAATTAGTACTTAAGAGTGAGCTT
AATTTAAAGCTTAATTTTAAATACTGAGGATTAAGGCTTAGTATTTAAGA
GCACTTTGGATAAGTTCCAGGACAGTCAAGTCTACACATAGAAACCCTGT
CTTTAAAAACAAAAACAAAAACAAACGAACAAAAAAGAAAAAGAAAAAAA
TATATAGTAAAAAAAAATATTGGGCTGGAGAGATGGCTCAGAGGTTGAGA
GAACTGTCTGCTCTTCCAGCGGTTCTGAGTTCAAGTCTCAGCAACCACAT
GATGGCTCACAACCATCTATAATGACATCTGGTGCCCTCTTCTGGCCAGC
AGGTGTATATGCAGGAAGAATGCTGTATACATGATAAATAAATCTTTAAA
AAAATCAAAAAGTGTTTTAAAAAGAGAGAATGACNATAGAATGACTCTGT
CATCTTAATTAATTTGGTATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_d17.g1 MSMg01no543_d17.g1 CHROMAT_FILE:
MSMg01no543_d17.g1 PHD_FILE: MSMg01no543_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:32 2005
         (633 letters)



>mm_chr6_115803897_115804929
          Length = 1033

 Score = 1185 bits (613), Expect = 0.0
 Identities = 624/631 (98%), Gaps = 6/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgttgaccaagctggcgttgaactcacaaagatacatatgcttctagctccccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgttgaccaagctggcgttgaactcacaaagatacatatgcttctagctccccagt 260

                                                                       
Query: 61  gccgggattaaaaattttcgagcaggaacaaacaaaacggtgtgagtaacttgcatctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccgggattaaaaattttcgagcaggaacaaacaaaacggtgtgagtaacttgcatctcg 320

                                                                       
Query: 121 gttctgagcatttccacctgagctgagatctactgtgtctgaaacaggacatttccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctgagcatttccacctgagctgagatctactgtgtctgaaacaggacatttccatgt 380

                                                                       
Query: 181 acggtcagagaaacatgtaagatgcgatcaagtcaagacatctcttgattgggaagtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggtcagagaaacatgtaagatgcgatcaagtcaagacatctcttgattgggaagtttg 440

                                                                       
Query: 241 aggagtattttcaaaattagtacttaagagtgagcttaatttaaagcttaattttaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagtattttcaaaattagtacttaagagtgagcttaatttaaagcttaattttaaata 500

                                                                       
Query: 301 ctgaggattaaggcttagtatttaagagcactttggataagttccaggacagtcaagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaggattaaggcttagtatttaagagcactttggataagttccaggacagtcaagtct 560

                                                                       
Query: 361 acacatagaaaccctgtctttaaaaacaaaaacaaaaacaaacgaacaaaaaagaaaaag 420
           ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||
Sbjct: 561 acacatagaaaccctgtctttaaaaacaaaaacaaa------cgaacaaaaaagaaaaag 614

                                                                       
Query: 421 aaaaaaatatatagtaaaaaaaaatattgggctggagagatggctcagaggttgagagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaaaaaatatatagtaaaaaaaaatattgggctggagagatggctcagaggttgagagaa 674

                                                                       
Query: 481 ctgtctgctcttccagcggttctgagttcaagtctcagcaaccacatgatggctcacaac 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctgtctgctcttcaagcggttctgagttcaagtctcagcaaccacatgatggctcacaac 734

                                                                       
Query: 541 catctataatgacatctggtgccctcttctggccagcaggtgtatatgcaggaagaatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 catctataatgacatctggtgccctcttctggccagcaggtgtatatgcaggaagaatgc 794

                                          
Query: 601 tgtatacatgataaataaatctttaaaaaaa 631
           |||||||||||||||||||||||||||||||
Sbjct: 795 tgtatacatgataaataaatctttaaaaaaa 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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