BAC Information

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BAC

Clone NameMSMg01-543F01
Chromosome6 (Build37)6 (Build37)
Map Location 132,130,132 - 132,130,786132,181,097 - 132,181,731
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600
Downstream genePrb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543F01.T7 (MSMg01no543_f01.b1)MSMg01-543F01.TJ (MSMg01no543_f01.g1)
ACCAG608880AG608881
length748745
length of high quality
(start - end)		699 (50 - 748)635 (84 - 718)
definitionCHROMAT_FILE: MSMg01no543_f01.b1 PHD_FILE: MSMg01no543_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:38 2005CHROMAT_FILE: MSMg01no543_f01.g1 PHD_FILE: MSMg01no543_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:39 2005
singlet/doubletsingletsinglet
BLAST hitpluralplural
Map location.(132,130,132 - 132,130,786)(132,181,097 - 132,181,731)
sequence
NNNNTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAGGCATTCTCAGATAAAAGGACATTGAAACACACAGGTG
ACTCTAGAAATGCATTCACTCCCTGGAATCTAAAGAAAGGGTTTGCTGAT
TCAAATGTACTTATGGAATAGTAAACTTCGCCTTGCACCATCAGAGTCTA
TGTGAAAAAAATAACCTTTGACTAAATTAATCTCTGATTTCTTTTTGTAT
ATTTGGAAGCTACAAAAAATAAGCAAGAAATAACCTTAGAGGAGAATGGA
AAAATCATTAATCATATGACAATATTAATTTCAAAGTCCATAGTTAATGA
AAGGGGATTAGTTATGGGCTTTAGCACCATTGGGATTATAAGAACGCACT
TTCTGAGACCTGTTCATTGCTTACATCTCTATAACTGCATCTTCTCTGTG
GTTCTTCCATAATTTACTGGTATTGCACCTTGTGAGTTTCTACAAATAAT
TTTTCAAAAAGCAAACCAAACTAAACCAAACCAAACCTAACCAAACCTAA
CAAAAAATTGTATCTTCGTCATGTAACTCATGTTGGGGGAGAGAAAGGAA
AGGAGTCTCACACTGGAAGATTCCATACATAACCTGCTACAGTGATTCAT
GATGCAACAATCCAAGAAAAAGCGTGATTTCCATGTAAAAGGTGACTTGT
TCTTACTCCTTCTATATGCTTTGTCTCTTGGAACTTTTGTTACCTAAN

NTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCAAATTATTTTT
CAATTTAGAAGGTTGTATTCTGGCATACATTATTGATAAGATATTGGTAG
AATATTATTAGAAAAAAAGTTGCCGCATGGAGTTGCTGGAAATCCTAGAG
TTATTTAAAGTCCATAATGGTAAAGAGTTTCATCTAGATATTTGCATCTT
ACTCTGAAACTCAATGGAAGTGGTTGTTTTTTCCTATTTGTTTTGTTTTG
TTTTGTTTGTGTGCATATTTTGCTTTGCTCACCTTATGCAGACTTGAAGA
CAATTTGTAGGAAACCACATTAGAGAAGGACAGCTGACTTTTTTTATCTT
TAATCATTTTTTACAGTCAAGTTCTCTTGCTCCTCATTGTCCTCCAGGAG
TTCCTCATAACATTCACCCAACAACCCCCCCCCCATCTCCAAGAGAATGT
TTCCATCCACCTACCCTTCCAGGACTTCCTACTCCATTGGACCCCAAATA
TCTCCAGGTTATGTGTGTCTTCTCTCACAGTGACCAGAAGAGATAGACCA
CTGTTGAATATGTGTCCAGCCTTTCCAGAATTCATCGACAAGAGTTCCTT
GCTTATATTCATTGGATAGGAGTAAGTATCTATGTCTGTCTCAGTCAGCT
GCTTGTTGGGCCTTTCAGAGGGTAGATATGCTAGGCTACTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_f01.b1 MSMg01no543_f01.b1 CHROMAT_FILE:
MSMg01no543_f01.b1 PHD_FILE: MSMg01no543_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:38 2005
         (699 letters)



>mm_chr6_132130132_132131230
          Length = 1099

 Score = 1251 bits (647), Expect = 0.0
 Identities = 653/655 (99%), Gaps = 1/655 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaggcattctcagataaaaggacattgaaacacacaggtgactctagaaatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggaattctcaggcattctcagataaaaggacattgaaacacacaggtgactctagaaatg 596

                                                                       
Query: 64  cattcactccctggaatctaaagaaagggtttgctgattcaaatgtacttatggaatagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cattcactccctggaatctaaagaaagggtttgctgattcaaatgtacttatggaatagt 536

                                                                       
Query: 124 aaacttcgccttgcaccatcagagtctatgtgaaaaaaataacctttgactaaattaatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaacttcgccttgcaccatcagagtctatgtgaaaaaaataacctttgactaaattaatc 476

                                                                       
Query: 184 tctgatttctttttgtatatttggaagctacaaaaaataagcaagaaataaccttagagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctgatttctttttgtatatttggaagctacaaaaaataagcaagaaataaccttagagg 416

                                                                       
Query: 244 agaatggaaaaatcattaatcatatgacaatattaatttcaaagtccatagttaatgaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agaatggaaaaatcattaatcatatgacaatattaatttcaaagtccatagttaatgaaa 356

                                                                       
Query: 304 ggggattagttatgggctttagcaccattgggattataagaacgcactttctgagacctg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggggattagttatgggctttagcaccattgggattataagaacgcactttctgagacctg 296

                                                                       
Query: 364 ttcattgcttacatctctataactgcatcttctctgtggttcttccataatttactggta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttcattgcttacatctctataactgcatcttctctgtggttcttccataatttactggta 236

                                                                       
Query: 424 ttgcaccttgtgagtttctacaaataattttt-caaaaagcaaaccaaactaaaccaaac 482
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 235 ttgcaccttgtgagtttctacaaatatttttttcaaaaagcaaaccaaactaaaccaaac 176

                                                                       
Query: 483 caaacctaaccaaacctaacaaaaaattgtatcttcgtcatgtaactcatgttgggggag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 caaacctaaccaaacctaacaaaaaattgtatcttcgtcatgtaactcatgttgggggag 116

                                                                       
Query: 543 agaaaggaaaggagtctcacactggaagattccatacataacctgctacagtgattcatg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agaaaggaaaggagtctcacactggaagattccatacataacctgctacagtgattcatg 56

                                                                  
Query: 603 atgcaacaatccaagaaaaagcgtgatttccatgtaaaaggtgacttgttcttac 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  atgcaacaatccaagaaaaagcgtgatttccatgtaaaaggtgacttgttcttac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_f01.g1 MSMg01no543_f01.g1 CHROMAT_FILE:
MSMg01no543_f01.g1 PHD_FILE: MSMg01no543_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:39 2005
         (635 letters)



>mm_chr6_132180897_132181932
          Length = 1036

 Score = 1151 bits (595), Expect = 0.0
 Identities = 626/637 (98%), Gaps = 4/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcaaattattttt-caatttagaaggttgtattctggcatacattattgataagat 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcaaattattttttcaatttagaaggttgtattctggcatacattattgataagat 260

                                                                       
Query: 60  attggtagaatattattagaaaaaaagttgccgcatggagttgctggaaatcctagagtt 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 attggtagaatattattagaaaaaaagttgctgcatggagttgctggaaatcctagagtt 320

                                                                       
Query: 120 atttaaagtccataatggtaaagagtttcatctagatatttgcatcttactctgaaactc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaaagtccataatggtaaagagtttcatctagatatttgcatcttactctgaaactc 380

                                                                       
Query: 180 aatggaagtggttgttttttcctatttgttttgttttgttttgtttgtgtgcatattttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggaagtggttgttttttcctatttgttttgttttgttttgtttgtgtgcatattttg 440

                                                                       
Query: 240 ctttgctcaccttatgcagacttgaagacaatttgtaggaaaccacattagagaaggaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgctcaccttatgcagacttgaagacaatttgtaggaaaccacattagagaaggaca 500

                                                                       
Query: 300 gctgacttttttt-atctttaatcattttttacagtcaagttctcttgctcctcattgtc 358
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gctgacttttttttatctttaatcattttttacagtcaagttctcttgctcctcgttgtc 560

                                                                       
Query: 359 ctccaggagttcctcataacattcacccaacaaccccccccccatctccaagagaatgtt 418
           ||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||
Sbjct: 561 ctccaggagttcctcatcacattcacccaacaacacccccc--atctccaagagaatgtt 618

                                                                       
Query: 419 tccatccacctacccttccaggacttcctactccattggaccccaaatatctccaggtta 478
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tccaaccacctacccttccaggacttcctactccattggaccccaaatatctccaggtta 678

                                                                       
Query: 479 tgtgtgtcttctctcacagtgaccagaagagatagaccactgttgaatatgtgtccagcc 538
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 679 tgtgtgtcttctctcacagtgaccagaagagatagaccactgctgaatatgtgtccagcc 738

                                                                       
Query: 539 tttccagaattcatcgacaagagttccttgcttatattcattggataggagtaagtatct 598
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttccagaattcatctacaagagttccttgcttatattcattggataggagtaagtatct 798

                                                
Query: 599 atgtctgtctcagtcagctgcttgttgggcctttcag 635
           |||||||||||||||||||||||||||||||||||||
Sbjct: 799 atgtctgtctcagtcagctgcttgttgggcctttcag 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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