BAC Information

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BAC

Clone NameMSMg01-543G10
Chromosome6 (Build37)
Map Location 31,037,710 - 31,211,331
singlet/doubletdoublet
Overlap geneLOC100038973, AB041803
Upstream geneNrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14
Downstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543G10.T7 (MSMg01no543_g10.b1)MSMg01-543G10.TJ (MSMg01no543_g10.g1)
ACCAG608945AG608946
length796760
length of high quality
(start - end)
102 (206 - 307)402 (198 - 599)
definitionCHROMAT_FILE: MSMg01no543_g10.b1 PHD_FILE: MSMg01no543_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:46 2005CHROMAT_FILE: MSMg01no543_g10.g1 PHD_FILE: MSMg01no543_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,037,710 - 31,037,811)(31,210,930 - 31,211,331)
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCAGGATAGCCAAGAGCGGGCCAGCAAAAAGCATGAATGCTAGT
AGCACCTTCCTCCAGCCCATCACAATCCCAGGTTGGGACCCTGCAGTCCT
GAGCAGTGACAATAAAACCACATTAGGTTGTTTTCCCAATTCCTACGAAA
TGATTCAGTAGGTCAAACAACTGATCCACTTGAGAGAACAATCCCTGCAG
CTACACTCCCCGCTTCCAGTAACTGGGCTCCTTCTCTCTGCCCTGCACAA
AGTGCTCCCACTCACCCAGTAGCCCATGGGGCCTGGCAGACCCAGAGTGG
GTACTGTCAGATAGTCAGTCTCTGCTGGGGTTAGCATCCTCCTTGGACAG
AGGCTACTGCTAGTATGGCCATACAGCTTCCTCATATTTACAGAAAAATT
TCTCTGTTAAGACCCTAAGTCATTTATCTCCTTCACATCATAGAAGGGTC
TTAGTGCTTTAAACATAAACTCAATAGTTACCCCTTCTGAAAGCTCCCCC
CTATAACAAAAAAAACCACTTTCCTTCTGCAAAAATAACTTTCTTTTTCC
TCAAAAGATTTCCCATATTTCTTAATACGGATTGGGTATATCCATTCATC
CCTCATTTGCTCTATTTACTATACCTTTGGGTTCCTCCTTGCCGTGCTTC
CGGCAAAATCATTCTACTTGTGTTTTTCCGTGTCATCTCTAATTTGTTGT
ATAAAATTCTTCCCCTGCACTTTCTTTTTCAATATATTTCTGTGTG
ACCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTTGCTACCGCCTGTCTCACC
ATAAGAATTCTGGGACTACAGACACACATGACCACATCCAGAATTGACAG
GGTCTCTGGGGATTCAAACTCAGGTCCTTACACTTGTGTGGTCAAGGCTT
TACCTCCTGAGCCATCTCCCCAGTCCAAATGAATAGATATTTCAAGAACT
TTGGTTCTGTAGGGAAAGGGGCCGAGAGCAAACAAACAGCAATAAGCAGG
CTTCCGGGGCAAGCCACAGAAACTCCCTGTGCCGAAGATTTTGGTTTGAG
CACAATGAGACAAAGCCACAGGCTTTATGACAGCCACAGGCACACAGCCA
AGGCCTTCAGACGCTGTGTATTTGGACTGCTGTAACCCCCAGTGTTAGAA
GCCCCATTCTTAATACCTAGTACCCCAGATATAACACGTCTTCTTTCACT
TGGGTTTCTACTGCGGTTACTCCTCCATTTCCTTTTAAGTTCTTAATGAA
AAAAAAAATGACACCCTGGATTTTTGAAAGGAGACGCCCTGAATTCCAAT
TCCCCAACACTGATTTTCTTTGGAGTTTTGCTCAATCTGAGAGGCTGTGA
GGAAAGAGCACCGCGCTGAATCAGAATTGGGCTTTTGTCTCCAAGAGGCT
GTCCGGCTTTAATAAAGGTACATAACTGCCCTTTTGCTTAGTTTTCCCGA
GTATAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_g10.b1 MSMg01no543_g10.b1 CHROMAT_FILE:
MSMg01no543_g10.b1 PHD_FILE: MSMg01no543_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
         (102 letters)



>mm_chr6_31037510_31038011
          Length = 502

 Score =  190 bits (98), Expect = 3e-53
 Identities = 101/102 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtaggtcaaacaactgatccacttgagagaacaatccctgcagctacactccccgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtaggtcaaacaactgatccacttgagagaacaatccctgcagctacactccccgctt 260

                                                     
Query: 61  ccagtaactgggctccttctctctgccctgcacaaagtgctc 102
           ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ccagtaactgggctcattctctctgccctgcacaaagtgctc 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no543_g10.g1 MSMg01no543_g10.g1 CHROMAT_FILE:
MSMg01no543_g10.g1 PHD_FILE: MSMg01no543_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
         (402 letters)



>mm_chr6_31210730_31211531
          Length = 802

 Score =  770 bits (398), Expect = 0.0
 Identities = 401/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttacctcctgagccatctccccagtccaaatgaatagatatttcaagaactttggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctttacctcctgagccatctccccagtccaaatgaatagatatttcaagaactttggttc 543

                                                                       
Query: 61  tgtagggaaaggggccgagagcaaacaaacagcaataagcaggcttccggggcaagccac 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 542 tgtagggaaaggggccgagagcaaacaaacagcaataagcaggcttccagggcaagccac 483

                                                                       
Query: 121 agaaactccctgtgccgaagattttggtttgagcacaatgagacaaagccacaggcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agaaactccctgtgccgaagattttggtttgagcacaatgagacaaagccacaggcttta 423

                                                                       
Query: 181 tgacagccacaggcacacagccaaggccttcagacgctgtgtatttggactgctgtaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgacagccacaggcacacagccaaggccttcagacgctgtgtatttggactgctgtaacc 363

                                                                       
Query: 241 cccagtgttagaagccccattcttaatacctagtaccccagatataacacgtcttctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cccagtgttagaagccccattcttaatacctagtaccccagatataacacgtcttctttc 303

                                                                       
Query: 301 acttgggtttctactgcggttactcctccatttccttttaagttcttaatgaaaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acttgggtttctactgcggttactcctccatttccttttaagttcttaatgaaaaaaaaa 243

                                                     
Query: 361 atgacaccctggatttttgaaaggagacgccctgaattccaa 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgacaccctggatttttgaaaggagacgccctgaattccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)