BAC Information

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BAC

Clone NameMSMg01-543H24
Chromosome6 (Build37)
Map Location 13,943,788 - 13,944,025
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik
Downstream geneLOC100041043, LOC100040513, LOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543H24.T7 (MSMg01no543_h24.b1)MSMg01-543H24.TJ (MSMg01no543_h24.g1)
ACCAG609021AG609022
length836747
length of high quality
(start - end)		220 (50 - 269)656 (82 - 737)
definitionCHROMAT_FILE: MSMg01no543_h24.b1 PHD_FILE: MSMg01no543_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:53 2005CHROMAT_FILE: MSMg01no543_h24.g1 PHD_FILE: MSMg01no543_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAACCCTGTATGTGTGTGTCCCATAGGTTATAGCAATGAGT
GAAATAAGATGGGGTAAAGGAGACACTGCAGTAGCAAAGATATATTCCAC
ATTTCCTCTCTCTCTCTTTCTCTCTTTCTTTTTCTCTCTCTTTCCCCCTC
TTTCCTCTCTCTCTCCCCTGTCTATGTCTCTCTCTCTCACTATCTCTTTC
TCTATCTCTGTGATTCTGTGCTTTTGCTCTCTGCTTCTGGACTGCTCTCT
TATCTCCTCCTACTACACCATTGCACATGTTCTTCATGGTAGATGGAGCT
GCTTTTTTTTTACTGAGTGTTTTCTGCTTGTGATGGAGCTAAAAATGGAG
CAATAAGAGCTTCTTACTTCATTTATCGTTTAAAGCCGGGTCAGTGATAA
TGATCTCTCTACACTGAACGGATTTGTGCTGAGGACAGAACTTAAGAGGG
GTGGGATTCAAGTTGTTTTTGTTCCCCTTTCCCTAAAAATTTTTCCAGTT
CAACTACCGGGGGCGGGCCTAAAAATTTTAATCCCGGTAAAAGGGGGCAA
ATTTTGAATTTTGGAGGTGGAAACCCCCAAAAAGGGGTGTTCAAAAGGNN
ANNNNNNNNNAAAAGGGGGTCCTCGGGAAAGGAAAAAGGGGNNNNNNNNN
NNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTNNNCNN
CCCCNTCTCCCCCGCCTTTTTTGTTTCCTCCATCACTCTTTTTTTTCTCT
TACTCCCCTGCCTTTTTTTTTAATAATTTTATATTG

NNNAACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAATCCACTTAGATTTG
ACCTTAGTACAAGGAGATAGTAATATATAAACAAACTCAAAGACAAAAAC
CACATGATCATCTCAGATGCTGAGAAAGCATTTGACAAAATCCAACACTC
ATTCATGATAAAAGTCTTGGAAAGATCAGAAATTCAAGGCCCATACCTAA
ACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAGCATCAAAGTAAAT
GGTGAGAAGCTTGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTG
CCCACTTTCTCCCTACCTATTCAACACAGTACTTGAAGTCCTAGCTAGAG
CAATTAGAAAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAAGAT
GTCAAAATATCACTTTTTGCAGACGATATGATAGTATATATACGTGACCC
TAAAAATTCCACCAGAGAACTCCTAAGCCTGATAAACAGCTTCAGTGAAG
TAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACA
AAGGACAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAAT
AGCCACAAATAATATAAAATATCTTGGTGTGACTCTAACTATGGAAGTGA
AAGATCTGTATGACAAGAACTTCATGTCTCTGAAGAAAGAAATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_h24.b1 MSMg01no543_h24.b1 CHROMAT_FILE:
MSMg01no543_h24.b1 PHD_FILE: MSMg01no543_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:53 2005
         (220 letters)



>mm_chr6_13943584_13944203
          Length = 620

 Score =  298 bits (154), Expect = 2e-85
 Identities = 208/238 (87%), Gaps = 22/238 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaccctgtatgtgtgtgtcccataggttatagcaatgagtgaaataagatggg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattccaaccctgaatgtgtgtgtcccataggttatagcaatgagtgaaataagatgga 264

                                                                       
Query: 65  gtaaaggagacactgcagtagcaaagatatattccacatttcctctctctctctttctct 124
           || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 gtcaaggagatactgcagtagcaaagatatattccacatttcctctctctctctctctct 324

                                                                       
Query: 125 ct-t-tct-t-------------------tttctctctctttccccctctttcctctctc 162
           || | ||| |                   |||||||||||| ||||||||||||||||||
Sbjct: 325 ctctgtctctctctctctctctctctctctttctctctcttcccccctctttcctctctc 384

                                                                     
Query: 163 tctcccctgtctatgtctctctctctcactatctctttctctatctctgtgattctgt 220
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcccctgtctctgtctctctccctcactatctctttctctatctctgtgattctgt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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