BAC Information

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BAC

Clone NameMSMg01-543I08
Chromosome6 (Build37)
Map Location 41,084,746 - 41,253,343
singlet/doubletdoublet
Overlap geneLOC100040359, LOC100040333, Try4
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2
Downstream gene1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543I08.T7 (MSMg01no543_i08.b1)MSMg01-543I08.TJ (MSMg01no543_i08.g1)
ACCAG609037AG609038
length744740
length of high quality
(start - end)		697 (48 - 744)575 (79 - 653)
definitionCHROMAT_FILE: MSMg01no543_i08.b1 PHD_FILE: MSMg01no543_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:55 2005CHROMAT_FILE: MSMg01no543_i08.g1 PHD_FILE: MSMg01no543_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:55 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(41,252,655 - 41,253,343)(41,084,746 - 41,085,320)
sequence
CCCTTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTCTCGGTTGGTGTATCCTCCAACAATCTTGTCATCATCA
TCCACAGGGAAAGCAACTTGAATAAAGACAAGAAGATCACTGAGAAGACA
ATCCCTCAAGGTGTTGTTAGGTGGAGCCCTCAGCTCTCAACTAACCAGGG
GTTCTTAATTAATGCAAGAAGAAATGGCAAGATAGTAGCACTGTATTTCT
CTTAGGCATGGAACAGCTTGTTCAACACAGTACTGCACTACACAGCACTG
CAAAACAATAGGAAGATACTCTGTATGTGACTTCACTCTCATGGATTCCC
AGGCATAGGGCAAATGATGCTATCTGTATGCAGGAATAATGTATAGAGAT
GGTTGTGTGATCCTCTACCGGTTTTGATCTCATGTTCCTCATTCTTTGAA
CCCTTTTGTCTGTCACATATTTTAAAGAGTTACCCATGGTTGGAAATCTC
TTAGATAATATTCTGGGTATGTACTCATGGGGTTTTATAGCTTAAGTCTG
TATTTTAAGGAAAATGGAGAGCAGTCCTTGTAAAGAAGAGAGGGATATAA
TATTATTGTTAAAGATCATTGATTTTTATATTTGATTGCATGTTTATAGG
TCTTAAAGTCATTTGGGTATTTAAAAAAATATATAGTACCAAAATATCCC
TCCTACTATGAGTCATTTTCCCATGCACATGTTAAGTATTTCAA

TTCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGATTTGGAGGAAACAT
GGCGGGGAATAGGGTAAATGAGGAAATGATGAAGGTGTGGAAATAGAATA
CTCACATAAGAGATTCTCAAAATATGAAAATGTTATTAGTATTATTATTC
CCAAATATTGAAAATGTAGCTATCAGTAGAAGCTTACCATTCCCTATGGA
AGTTCAGAAAACTCATTTATTATGATGAACTTTGACATGCCACTCAAAAG
CCTGAGCTGAGTGTGAGGACACTGGATGAACTCACATGCAGTCTGTGCAT
ATGCTAAACCATTTTCACTCAGAGGGACTGTGCTAAGACTGATTCTCTGA
AGGGACAGTAAAGTCATCATGGGAAGTGTCATGTGGTACTAAGTAATGCA
GCTGTCAAGACCTTGCTGTGGTAAGCCCTCCTCTGCCCTCAATCTGCCAT
GGGCACCAGGCTTCTTGGCTGGGCAGTGTTCTGTCTCCTTGACACAGGTA
AGTTTTTAGAAAAACAGTCTCCGTTTTGCATTTCTCTGGGGTGTGTGTGT
GTGATTATTTCAATTGTTCCCATTTTGAAACAGTCTGATCTTTTCCCACA
GTACTGTCTGAAGCTGGAGTCACCCATTCTCCCAGATATGCAGTCCTACA
GGAAGGGCCAGCTGTTTTCCTTTTGGTGTGACCCTATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_i08.b1 MSMg01no543_i08.b1 CHROMAT_FILE:
MSMg01no543_i08.b1 PHD_FILE: MSMg01no543_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
         (697 letters)



>mm_chr6_41252447_41253543
          Length = 1097

 Score = 1247 bits (645), Expect = 0.0
 Identities = 678/689 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctctcggttggtgtatcctccaacaatcttgtcatcatcatccacagggaaagca 68
           ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 897 gaattctctcggcaggtgtatcctccaacgatcttgtcatcatcatccacagggaaagca 838

                                                                       
Query: 69  acttgaataaagacaagaagatcactgagaagacaatccctcaaggtgttgttaggtgga 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 acttgaataaagacaagaagatcactgagaagacaatccctcaaggtgttgttaggtgga 778

                                                                       
Query: 129 gccctcagctctcaactaaccaggggttcttaattaatgcaagaagaaatggcaagatag 188
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 777 gccctcagctctcaactaactaggggttcttaattaatgcaagaagagatggcaagatag 718

                                                                       
Query: 189 tagcactgtatttctcttaggcatggaacagcttgttcaacacagtactgcactacacag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tagcactgtatttctcttaggcatggaacagcttgttcaacacagtactgcactacacag 658

                                                                       
Query: 249 cactgcaaaacaataggaagatactctgtatgtgacttcactctcatggattcccaggca 308
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 657 cactgcaaaactataggaagataatctgtatgtgacttcactctcatggattcccaggca 598

                                                                       
Query: 309 tagggcaaatgatgctatctgtatgcaggaataatgtatagagatggttgtgtgatcctc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tagggcaaatgatgctatctgtatgcaggaataatgtatagagatggttgtgtgatcctc 538

                                                                       
Query: 369 taccggttttgatctcatgttcctcattctttgaacccttttgtctgtcacatattttaa 428
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 537 taccagttttgatctcatgttcctcattctttgaacccttttgtctgtcatatattttaa 478

                                                                       
Query: 429 agagttacccatggttggaaatctcttagataatattctgggtatgtactcatggggttt 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agagttacccatggttggaaatctcttagataatattctgggtatgtactcatggggttt 418

                                                                       
Query: 489 tatagcttaagtctgtattttaaggaaaatggagagcagtccttgtaaagaagagaggga 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tatagcttaagtctgtattttaaggaaaatggagagcagtccttgtaaagaagagaggga 358

                                                                       
Query: 549 tataatattattgttaaagatcattgatttttatatttgattgcatgtttataggtctta 608
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 357 tataatattattgttaaagatcattgatttttgtatttgattgcatgtttataggtctta 298

                                                                       
Query: 609 aagtcatttgggtatttaaaaaaatatatagtaccaaaatatccctcctactatgagtca 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aagtcatttgggtatttaaaaaaatatatagtaccaaaatatccctcctactatgagtca 238

                                        
Query: 669 ttttcccatgcacatgttaagtatttcaa 697
           |||||| ||||||||||||||||||||||
Sbjct: 237 ttttcctatgcacatgttaagtatttcaa 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_i08.g1 MSMg01no543_i08.g1 CHROMAT_FILE:
MSMg01no543_i08.g1 PHD_FILE: MSMg01no543_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
         (575 letters)



>mm_chr6_41084546_41085520
          Length = 975

 Score = 1104 bits (571), Expect = 0.0
 Identities = 574/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaggatttggaggaaacatggcggggaatagggtaaatgaggaaatgatgaaggtgt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aagaaggatttggaggaaacatggcgggggatagggtaaatgaggaaatgatgaaggtgt 260

                                                                       
Query: 61  ggaaatagaatactcacataagagattctcaaaatatgaaaatgttattagtattattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaatagaatactcacataagagattctcaaaatatgaaaatgttattagtattattat 320

                                                                       
Query: 121 tcccaaatattgaaaatgtagctatcagtagaagcttaccattccctatggaagttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccaaatattgaaaatgtagctatcagtagaagcttaccattccctatggaagttcaga 380

                                                                       
Query: 181 aaactcatttattatgatgaactttgacatgccactcaaaagcctgagctgagtgtgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactcatttattatgatgaactttgacatgccactcaaaagcctgagctgagtgtgagg 440

                                                                       
Query: 241 acactggatgaactcacatgcagtctgtgcatatgctaaaccattttcactcagagggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactggatgaactcacatgcagtctgtgcatatgctaaaccattttcactcagagggac 500

                                                                       
Query: 301 tgtgctaagactgattctctgaagggacagtaaagtcatcatgggaagtgtcatgtggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgctaagactgattctctgaagggacagtaaagtcatcatgggaagtgtcatgtggta 560

                                                                       
Query: 361 ctaagtaatgcagctgtcaagaccttgctgtggtaagccctcctctgccctcaatctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaagtaatgcagctgtcaagaccttgctgtggtaagccctcctctgccctcaatctgcc 620

                                                                       
Query: 421 atgggcaccaggcttcttggctgggcagtgttctgtctccttgacacaggtaagttttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgggcaccaggcttcttggctgggcagtgttctgtctccttgacacaggtaagttttta 680

                                                                       
Query: 481 gaaaaacagtctccgttttgcatttctctggggtgtgtgtgtgtgattatttcaattgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaaacagtctccgttttgcatttctctggggtgtgtgtgtgtgattatttcaattgtt 740

                                              
Query: 541 cccattttgaaacagtctgatcttttcccacagta 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 cccattttgaaacagtctgatcttttcccacagta 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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