BAC Information

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BAC

Clone NameMSMg01-544G02
Chromosome6 (Build37)
Map Location 43,915,038 - 43,915,596
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544G02.T7 (MSMg01no544_g02.b1)MSMg01-544G02.TJ (MSMg01no544_g02.g1)
ACCAG609693AG609694
length749739
length of high quality
(start - end)
559 (75 - 633)638 (80 - 717)
definitionCHROMAT_FILE: MSMg01no544_g02.b1 PHD_FILE: MSMg01no544_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:01 2005CHROMAT_FILE: MSMg01no544_g02.g1 PHD_FILE: MSMg01no544_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGGCTCATAAGTTGCGGGCTCGTAAXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAACAGAATTCTAAATAAAAGACAATTGTTCACAAGGTT
GAATTTCCAAAGAAATCACAGGAAAATCTAGCTTTATAACTGCCCATTTC
CTTTGTAATTAAAATCAACTCAATTACAATTCATTTAATTCTGTCTATTA
CACATATTAGAAGGTTGATAGTGTAGTTACTGCAACTTTTTTTTCAGTTT
ATCCTTGTATACAACAGCAAAAACTGGACACATAAATTCTGTATTGTTTC
TAACCTTTATAAATTATTAACAATAACCTTATAATTTTATACACCAGCTT
TTGTTATTAGAAATTTATAAGGCAACACCAGGAACTTCTGTTTTCAGCTT
TTGAAACTATATTTTAGTATTCAATCCTTACCTAAAAGACCTTTTCCCTT
AAAAATATGTACATCAGCTGCTCTTTCAATTATATCTCCTTTTAATTTAC
TTATCAACTGTGTTGGAAAGTAAAGCTCCCTTGGTTTCTCAGGGCTCCTA
TAAAACCTCTACCCACTAAAGACTATACGTGCTATGAAAATTAGCCCGTA
TCCTTTTACAAAGGCAATTATGTTGAGTCTGAGATGAAAAAGAAGATTAC
ATTCTTCTAGCCTCAAGTTCATCCCTAGGTTTACCTCACAGTGTCAAGAA
GAAAGATCCACTGTTTCTATCAACATTTATCAAAAGGTCACAGATAGCA
GGAGGCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGTTTTGAGTTACTTTTGT
GCACAGACCTGAAGTGAGAACTTCTAATTTCTTTGGAAGCTATGTCAAAT
GATGTTTTCTTGAAGCAGACACCAGGTAAAGGGATGTTTTGATATAGCAA
ATACATGAAAGGCCCTGTGATGAAGGAGTGTAGATATGACCCCACAGACA
ATGGGAGATGAGCACTGGATGTTGGTTTGGTTTGCTCTGCTTCATTACTC
TCTGCTAATGGCACACATGTTCATCTTACATAGTATTGTTAAGCTAAACT
TGAGGTAATGTCACCGTTGAGAGAAACTTGCCCAAGAACTGCTCATGAGG
TTCCTGCTGCAGCTTGCCACTTCACTTCAGGCCAGTTGTCCAGCTGTGTG
TGCAGTGTCTTCAGGATTGACAATTGACCTACAGCTGCTGGCTCATGCCT
AGTGTCGGTCTGCTTAAAGGACAGGACTATAGCTGATGGTTTGTGAGTAG
TATCTGCCTGGCTAGAGGACTGGAAAGAAGCTGCTGAGTTGTATTTGGTG
TTTGCTACAGGACTGAACAGCTGTCAAAGAAAATCTAGCTTATCCTCCAA
AGAACTATTGTTGAACAGGTCCACTTCCCCCATTATCCATATTAATTTTC
TCTTCCACTACCTTTGCTGGGCAGTGGGTTAGAGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_g02.b1 MSMg01no544_g02.b1 CHROMAT_FILE:
MSMg01no544_g02.b1 PHD_FILE: MSMg01no544_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:01 2005
         (559 letters)



>mm_chr6_43914838_43915796
          Length = 959

 Score = 1073 bits (555), Expect = 0.0
 Identities = 558/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaagacaattgttcacaaggttgaatttccaaagaaatcacaggaaaatctagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aataaaagacaattgttcacaaggttgaatttccaaagaaatcacaggaaaatctagctt 700

                                                                       
Query: 61  tataactgcccatttcctttgtaattaaaatcaactcaattacaattcatttaattctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tataactgcccatttcctttgtaattaaaatcaactcaattacaattcatttaattctgt 640

                                                                       
Query: 121 ctattacacatattagaaggttgatagtgtagttactgcaacttttttttcagtttatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctattacacatattagaaggttgatagtgtagttactgcaacttttttttcagtttatcc 580

                                                                       
Query: 181 ttgtatacaacagcaaaaactggacacataaattctgtattgtttctaacctttataaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttgtatacaacagcaaaaactggacacataaattctgtattgtttctaacctttataaat 520

                                                                       
Query: 241 tattaacaataaccttataattttatacaccagcttttgttattagaaatttataaggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tattaacaataaccttataattttatacaccagcttttgttattagaaatttataaggca 460

                                                                       
Query: 301 acaccaggaacttctgttttcagcttttgaaactatattttagtattcaatccttaccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 acaccaggaacttctgttttcagcttttgaaactatattttagtattcaatccttaccta 400

                                                                       
Query: 361 aaagaccttttcccttaaaaatatgtacatcagctgctctttcaattatatctcctttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaagaccttttcccttaaaaatatgtacatcagctgctctttcaattatatctcctttta 340

                                                                       
Query: 421 atttacttatcaactgtgttggaaagtaaagctcccttggtttctcagggctcctataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atttacttatcaactgtgttggaaagtaaagctcccttggtttctcagggctcctataaa 280

                                                                       
Query: 481 acctctacccactaaagactatacgtgctatgaaaattagcccgtatccttttacaaagg 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 279 acctctacccactaaagactatacgtgctatgaaaattagcctgtatccttttacaaagg 220

                              
Query: 541 caattatgttgagtctgag 559
           |||||||||||||||||||
Sbjct: 219 caattatgttgagtctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)