BAC Information

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BAC

Clone NameMSMg01-544G03
Chromosome6 (Build37)
Map Location 17,462,874 - 17,463,363
singlet/doubletsinglet
Overlap geneMet
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1
Downstream geneCapza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544G03.T7 (MSMg01no544_g03.b1)MSMg01-544G03.TJ (MSMg01no544_g03.g1)
ACCAG609695AG609696
length751756
length of high quality
(start - end)		491 (82 - 572)577 (82 - 658)
definitionCHROMAT_FILE: MSMg01no544_g03.b1 PHD_FILE: MSMg01no544_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:01 2005CHROMAT_FILE: MSMg01no544_g03.g1 PHD_FILE: MSMg01no544_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGATGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGGAG
GGGCGGAATTCTCTATAGTTCACTTCCCTCAACTTCTGTGCCCCCCAAAA
CATGCACATATGCATGGATTTTAAGATATATCATAGAGTGACTTTTAACG
TCATCATCACCACCATCACCATCACCATCATCATCATCGTACCTGAAATT
CATTCCATAGGATTTGCTGGTAAGGCACTATACACTAATGTCAAGAAATG
AGACATTTAAAGTTTTGCTTTTCTTCTTAATGGCATCCAGGTTCCCCCAT
CTTCATGAGTGTGCATTCGAACCACAGTGTAACATTGAGATTTACAAGCT
GTGCCTCCCATTTTTGAGAGTCTGTACACACAACAGTGCCTGGAGCCCCA
ACAGTCACTACAGATGTTCATGCACAGTTAAGGCTGTTGTCTGTTCATGT
GACTATCCTTGATATTCTGAGCAAACTCTTTAATGACACACAGCAAAGTT
TTCCTACCAGCTTGTTTGTCCCCAGAATCTAACTTTTGGTGGCCATGTTT
TACTCCAGACCCTGCTGAGAAACTCTTCCGGCTTGTGAACGCGCAGTGAC
GAGTATCGGACAGAGTTTACCACGGCTTTGCAGCGCGTCTACTTATTCCT
GGGCCGGCTTAACCAAGTGCTCCCTGAACTCCATCTCCCCCCTTCATCAA
AGGGGAACCTCAACATTTGGTAATCTAGGGGAGTTCTGAAAGGTCTCTTT
T

GGATGCAATGAATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGAAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACA
ATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACA
CTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_g03.b1 MSMg01no544_g03.b1 CHROMAT_FILE:
MSMg01no544_g03.b1 PHD_FILE: MSMg01no544_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:01 2005
         (491 letters)



>mm_chr6_17462674_17463563
          Length = 890

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%), Gaps = 1/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttctgtgccccccaaaacatgcacatatgcatggattttaagatatatcatagagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttctgtgccccccaaaacatgcacatatgcatggattttaagatatatcatagagtga 260

                                                                       
Query: 61  cttttaacgtcatcatcaccaccatcaccatcaccatcatcatcatcgtacctgaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttaacgtcatcatcaccaccatcaccatcaccatcatcatcatcgtacctgaaattc 320

                                                                       
Query: 121 attccataggatttgctggtaaggcactatacactaatgtcaagaaatgagacatttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccataggatttgctggtaaggcactatacactaatgtcaagaaatgagacatttaaa 380

                                                                       
Query: 181 gttttgcttttcttcttaatggcatccaggttcccccatcttcatgagtgtgcattcgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttgcttttcttcttaatggcatccaggttcccccatcttcatgagtgtgcattcgaa 440

                                                                       
Query: 241 ccacagtgtaacattgagatttacaagctgtgcctcccatttttgagagtctgtacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacagtgtaacattgagatttacaagctgtgcctcccatttttgagagtctgtacacac 500

                                                                       
Query: 301 aacagtgcctggagccccaacagtcactacagatgttcatgcacagttaaggctgttgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagtgcctggagccccaacagtcactacagatgttcatgcacagttaaggctgttgtc 560

                                                                       
Query: 361 tgttcatgtgactatccttgatattctgagcaaactctttaatgacacacagcaaagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcatgtgactatccttgatattctgagcaaactctttaatgacacacagcaaagttt 620

                                                                       
Query: 421 tcctaccagcttgtttgtccccagaatctaacttttggtggccatgttttactccagacc 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 -cctaccagcttgtttgtccccagaatctaacttttggtggccatgttttactccagacc 679

                      
Query: 481 ctgctgagaaa 491
           |||||||||||
Sbjct: 680 ctgctgagaaa 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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