Query= MSMg01no544_j07.b1 MSMg01no544_j07.b1 CHROMAT_FILE:
MSMg01no544_j07.b1 PHD_FILE: MSMg01no544_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:17 2005
(664 letters)
>mm_chr6_16096385_16097448
Length = 1064
Score = 1187 bits (614), Expect = 0.0
Identities = 650/662 (98%), Gaps = 3/662 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttttatattattaatgtgagtgtactgagatgcagttatgaaaataatggggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcttttatattattaatgtgagtgtactgagatgcagttatgaaaataatggggt 264
Query: 64 tctttagggaaaaaaaagctcagagatgtcattatacagtatttgctcatatggtataca 123
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttaggg-aaaaaaagcccagagatgtcattatacagtatttgctcatatggtataca 323
Query: 124 tccataaggaaacaaaattagcattcctagacatctctgtggtccatgttgttaaagcat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccataaggaaacaaaattagcattcctagacatctctgtggtccatgttgttaaagcat 383
Query: 184 tatttacacttgattttagtcaaacaggtaggaagtaataagcaacattatttatgacga 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 384 tatttacacttgattttagtcaaacagataggaagtaataagcaacattatttatgatga 443
Query: 244 ggaggatttgatgtgtactaataaatgaaaggctacagaaatgtgagagctatgtattta 303
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaggatttgatgtgtactgataaatgaaaggctacagaaatgtgagagctatgtattta 503
Query: 304 tataaagcgtatataatgaaacacagttcagtgaagg-ttaatatcacactacatatatc 362
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 504 tataaagcgtatataatgaaacacagttcagtgaaggattaatatcacactatatatatc 563
Query: 363 attttatgtgtaaaatataaaacactcaaatagatagaaacagataatgaaaaaaaaaca 422
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 564 attttatgtgtaaaatataaaacactcaaatagataggaacagataatggaaaaaaa-ca 622
Query: 423 gtgattaacaaaggtcaggagaagtcgctaagcacaattagtcaatctagagatatatta 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 623 gtgattaacaaaggtcaggagaagtcgctaagcacaattagtcagtctagagatatatta 682
Query: 483 ctgtaaggcagtacttgttgatatgagtcctatattatatatcttaaaggtgttaattgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgtaaggcagtacttgttgatatgagtcctatattatatatcttaaaggtgttaattgt 742
Query: 543 atgtgcttttaccataaaaaagggaaaggaatgtaacaggtatttaactacatttgactg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgtgcttttaccataaaaaagggaaaggaatgtaacaggtatttaactacatttgactg 802
Query: 603 actcctacactctggaagaatagttaaataatgtgctactctttgtggcaattcatagct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 803 actcctacactctggaagaatagttaaataatgtgctactctttgtggcaattcatacct 862
Query: 663 ca 664
||
Sbjct: 863 ca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_j07.g1 MSMg01no544_j07.g1 CHROMAT_FILE:
MSMg01no544_j07.g1 PHD_FILE: MSMg01no544_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:17 2005
(567 letters)
>mm_chr6_16261005_16261971
Length = 967
Score = 1058 bits (547), Expect = 0.0
Identities = 562/567 (99%), Gaps = 1/567 (0%)
Strand = Plus / Minus
Query: 1 tctgagaagacagggatggggtaatttgggtgggatttttaagagtgggactgggagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tctgagaagacagggatggggtaatttgggtgggatttttaagagtgggactgggagaac 829
Query: 61 aacgagagactagggcgtgagataagcatgaacaaataaatcaattaattaat-aaaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 828 aacgagagactagggcgtgagataagcatgaacaaataaatcaattaattaataaaaaaa 769
Query: 120 atctctagactgaattggtgatgacacagttgctttgtgtctttggtttgtttttattgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atctctagactgaattggtgatgacacagttgctttgtgtctttggtttgtttttattgc 709
Query: 180 taatatcagtgttgttttaatttaattgagagcaggtgccagggtacatatctatggttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 taatatcagtgttgttttaatttaattgagagcaggtgccagggtacatatctatggttt 649
Query: 240 acccatatgtgtatgtgagcacaggagggctgctgatatcttcctctctcaatctttatc 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 648 acccatatgtgtatgtgagcacaggagggctgctgatatctccctctctcaatctttatc 589
Query: 300 ttgtttcttttaaacttgctcctgttctaaacctagagctcagaaagttgggttgttgat 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 588 ttgtttcttttaaacttgctcctgttctaaacctagagctcagaaaattgggttgttgat 529
Query: 360 gttggccactgtgaaatggtttgtttcacagcatatgctgactgctggcaagcccctgct 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 528 gttggccactgtgaaatggtttgtttcccagcatatgctgactgctggcaagcccctgct 469
Query: 420 gtcctcctggctctttccaccttggtgctggtgttgctaccataggtggatctaaaatta 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 gtcctcctggctctttccaccttggtgctggtgttgctagcataggtggatctaaaatta 409
Query: 480 ctgttatttggagtgtggaagtccaaactcttgatgggtgtgcaacaagtgatctcaagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgttatttggagtgtggaagtccaaactcttgatgggtgtgcaacaagtgatctcaagg 349
Query: 540 gtaggaccacttctccagcctttcagt 566
|||||||||||||||||||||||||||
Sbjct: 348 gtaggaccacttctccagcctttcagt 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
