Query= MSMg01no544_j11.b1 MSMg01no544_j11.b1 CHROMAT_FILE:
MSMg01no544_j11.b1 PHD_FILE: MSMg01no544_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:18 2005
(291 letters)
>mm_chr6_14560121_14560810
Length = 690
Score = 478 bits (247), Expect = e-139
Identities = 274/283 (96%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 9 tccaggtaactaaccacagattgtaattgaccaaattacagtaagaagaactgtaattag 68
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tccaggtaactaaacacagattgtaattgaccaaattacagtaagaagaactgtaattag 431
Query: 69 ttaatttaataaaagatgtaggggatttctaaggatagtagtgaactacaaaaaaaatga 128
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 430 ttaatttaataaaagatgtaggggatttccaaggatagtagtgaactac-aaaaaaatga 372
Query: 129 actattaattcaagagaactgaagatgaagaggaattcaatgagaatttaaaaatctttc 188
|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 371 actactaattcaagagaactgaagatgaagaggaatacaatgagaattttaaaatctttc 312
Query: 189 tcttcaatgaaagcaaagataatacaatggggctcaatattaatagaagaagatttaatt 248
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 311 tcttcaatgaaagcaaagataatacaatgggactcagtattaatagaagaagatttaatt 252
Query: 249 aggaaggaaattgcaaaaaagagaatattccaagtgggataga 291
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 aggaaggaaattgcaaaaaagagagtattccaagtgggataga 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space: 192042
Effective search space used: 192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no544_j11.g1 MSMg01no544_j11.g1 CHROMAT_FILE:
MSMg01no544_j11.g1 PHD_FILE: MSMg01no544_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:18 2005
(592 letters)
>mm_chr6_14400211_14401202
Length = 992
Score = 1093 bits (565), Expect = 0.0
Identities = 585/592 (98%), Gaps = 2/592 (0%)
Strand = Plus / Plus
Query: 1 ctaattttatactagtagttattgaatcctttatagaaaggactacaatgaaggccctac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 203 ctaattttatactagtagttattgaatcctttatagaaaggactacaatgtaggccctac 262
Query: 61 aaatctgcatatatcacaggctcattataaaaagatagaaagcagagagatttatgatta 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaatctgcatatatcacaagctcattataaaaagatagaaagcagagagatttatgatta 322
Query: 121 aggaaaacattccactatgctataaaactattatctgataactaaaggccataatctgtg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggaaaacattccact-tgctataaaactattatctgataactaaaggccataatctgtg 381
Query: 181 gatgaacagtttattgcagatgcaagaaaataagatgaaaatactggctatacaaaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gatgaacagtttattgcagatgcaagaaaataagatgaaaatactggctatacaaaactt 441
Query: 241 cagtactaataagatattaggcagatgatatgatgcctctgaacagaaacatgctaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagtactaataagatattaggcagatgatatgatgcctctgaacagaaacatgctaaata 501
Query: 301 aatattatagtttttaactctaaatgaatagacatttagagacatttagtgacatacaat 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatattatggtttttaactctaaatgaatagacatttagagacatttagtgacatacaat 561
Query: 361 gaagtctagttagataattaatcttaagggaaacacatgtaaacatttctgttgttattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaagtctagttagataattaatcttaagggaaacacatgtaaacatttctgttgttattt 621
Query: 421 cttattcagtttatgatttgaattaatgtttaaactttttgtgaacttttgaaaaaaatg 480
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 622 cttattcagtttatgatttgaattaatgtttgaactttt-gtgaacttttgaaaaaaatg 680
Query: 481 atgcttcgaatatcatttgatctattctcctaaaaaagtatagatacaggaaggatgaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcttcgaatatcatttgatctattctcctaaaaaagtatagatacaggaaggatgaca 740
Query: 541 ttaagtaagcttaagaaggtttaaaagagaagcagagtnaaagcaaaatata 592
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 ttaagtaagcttaagaaggtttaaaagagaagcagagtaaaagcaaaatata 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
