Query= MSMg01no544_p24.b1 MSMg01no544_p24.b1 CHROMAT_FILE:
MSMg01no544_p24.b1 PHD_FILE: MSMg01no544_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:51 2005
(599 letters)
>mm_chr6_106639602_106640600
Length = 999
Score = 1127 bits (583), Expect = 0.0
Identities = 592/595 (99%)
Strand = Plus / Plus
Query: 5 gaattctttgtttatctctgagccccattttttaatggggttatttgattttctggagtc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgagccccattttttaatggggttatttgattttctggagtc 264
Query: 65 caccttcttgaattctttttatatattggttattagtcccctatctgatttaggataggt 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 caccttcttgaattctttttatatattggatattagtcccctatctgatttaggataggt 324
Query: 125 aaagatcctttcccaatctgttggtggcctttttgtcttattgatggtgtcttttacctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatcctttcccaatctgttggtggcctttttgtcttattgatggtgtcttttacctt 384
Query: 185 acagaagctttgcagttttatgaggtcccatttgtattttctcgatcttacagcacaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagaagctttgcagttttatgaggtcccatttgtattttctcgatcttacagcacaagc 444
Query: 245 cattgctgttctattcaggaatttttcccctgtgcccatatctttgaggcttttccccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattgctgttctattcaggaatttttcccctgtgcccatatctttgaggcttttccccac 504
Query: 305 tttctcttctataagtttcagtgtctctggttttatgtgtttcttaattatctcaccatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctcttctataagtttcagtgtctctggttttatgtgtttcttaattatctcaccatc 564
Query: 365 ctaataaccccttaaagaagaaattcctagaatctactgtgtctattagacctaactttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaataaccccttaaagaagaaattcctagaatctactgtgtctattagacctaactttg 624
Query: 425 aagacaaggagatgtgttaagatgatatctctagaatttctaagcctgggatctgatctg 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 aagacaaggagatgtgttaagatgatacctctagaatttctaagcctgggatctgatctg 684
Query: 485 tatggaatctctttctgccccttgacctcagtttactttgcctggcaatcagcagataga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatggaatctctttctgccccttgacctcagtttactttgcctggcaatcagcagataga 744
Query: 545 cacagtgagtgaaaataaagcattacaagaaaaggccatgaaggtaaagagacca 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacagtgagtgaaaataaagcattacaagaaaaggccatgaaggtaaagagacca 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_p24.g1 MSMg01no544_p24.g1 CHROMAT_FILE:
MSMg01no544_p24.g1 PHD_FILE: MSMg01no544_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:51 2005
(601 letters)
>mm_chr6_106813441_106814441
Length = 1001
Score = 1029 bits (532), Expect = 0.0
Identities = 576/598 (96%), Gaps = 12/598 (2%)
Strand = Plus / Minus
Query: 1 atcatacatagtctcacagtagacaggagcaaatgatcttaaaactgtgtctatatggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atcatacatagtctcacagtagacaggagcaaatgatcttaaaactgtgtctatatggag 527
Query: 61 actaaggggaaggcttggtggctttaaagaagctttcaatagaagctaagtaccacatga 120
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 526 actaaggggaaggctcggtggctttaaagaagctttcaatagaagctgagtaccacatga 467
Query: 121 cttccatttgttgatgacaggtctgattctcttagctatggtgtttttcagtccaggtta 180
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 466 cttccatttgttgatgacagatctgattctcttagctatggtgtttttaagtccaggttg 407
Query: 181 gtaggttgttcactaagcacaaaatatgcagtacatgagtattcccttcatcatccactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtaggttgttcactaagcacaaaatatgcagtacatgagtattcccttcatcatccactg 347
Query: 241 aattattaactcaattgttttcatctcttagcttacattttcttatataataatcctgaa 300
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 346 aattattaactcaattgttttcatctcttagcttacattttcttttataatcatcctgaa 287
Query: 301 ttgtgattatcattgttctgacttttccatttttatttataaattatgtatttgtgggga 360
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 286 tggtgattatcattgttctgacttttgcatttttatttataaattatgtatttgtgggga 227
Query: 361 caagagtatgaattcctaaaagtattggtgtccatgaaaaccaaaggtatcagaactctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 caagagtatgaattcctaaaagtattggtgtccatgaaaaccaaaggtatcagaactctc 167
Query: 421 tgaaactggagttacaggcacccaacatggatgctgggaactgaacttgtagagtagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tgaaactggagttacaggcacccaacatggatgctgggaactgaacttgtagagtagaat 107
Query: 481 atgttcttaaaccctgagctatctctccagctgtttgctattttgatttgaaaggtggtg 540
|||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 106 atgttcttaaacactgagct------------gtttgctattttgatttgaaaggtggtg 59
Query: 541 aaggcattaagttatacaagctcagaatcttagaatctgaatttaagtgcaaagctct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 aaggcattaagttatacaagctcagaatcttagaatctgaatttaagtgcaaagctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
