BAC Information

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BAC

Clone NameMSMg01-545B06
Chromosome6 (Build37)
Map Location 136,807,553 - 136,974,484
singlet/doubletdoublet
Overlap geneMgp, Erp27, Arhgdib, Pde6h
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4
Downstream geneRerg, Ptpro, Eps8, Strap, Dera, 9830102E05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B06.T7 (MSMg01no545_b06.b1)MSMg01-545B06.TJ (MSMg01no545_b06.g1)
ACCAG610226AG610227
length752749
length of high quality
(start - end)
618 (35 - 652)612 (62 - 673)
definitionCHROMAT_FILE: MSMg01no545_b06.b1 PHD_FILE: MSMg01no545_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:57 2005CHROMAT_FILE: MSMg01no545_b06.g1 PHD_FILE: MSMg01no545_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,974,158 - 136,974,484)(136,807,553 - 136,808,164)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGGAT
GGGGAGCACAGCCTAAAGTCCTAACCATCTCTAGAAAGTCCTGCATGCCA
ACGCTGTTAAACGTGCATGTTTTCCAGCCTTCCTTTTCAGGTACACATTC
AAACTCTGTCATTCTCCTCATGACCCTTCAAGCACAGGTCCTTCTCACAG
GCACGGTGCACGCATTTCATCTCACAAACCCCAGAGGCTTCACAAGCTCC
AGCCTTGACTCAAAAGGCCCGGAGTCCAGACTCTTATCCCAGTCAAATAA
GGATGAGACTGGAGGCATGACTCATCCTGAGCGCATTTCTCCCCAGCTGG
GAGCCTGAGAAGTTAATGAGTTCTGCGCTCCCAGGACACAATAGTGGGAC
ACACATGGACAGACATTCTCATTCCTAAAGGGGGAGGAGGGATGAAAGAA
CAACTCTTTCAAGTCTACAACCAAAAGGAAAACATTAGGACTTGGGGATT
TAGTAATCTTGACTCCTTGTTATATCTTGGGAACCTTGGGCTGGGGCTGG
GCCTCCACTGCCTTCCCTATGGNTTCCTTCTTTCCTTCCTTCCTTCTTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
CCCTCCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCCTCTCTGTCTCTCCC
TCCCTCTCTCTCCCTCTCTCCTTCCCTCCTTTTCTGGCTCTCTTTCTTTC
TT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGATTCTCTGTCCCTGTCTCAGGAGTGCTGGGATTACA
GATGTGCTCAAGAGCTCCAAACTTAAGATAAAGCCATGTTTACTGTTTCC
CACTAATACCTAATACTTGACAAAATTGACTAGCTGCTCAGGATCAGAAT
AGGTGCATAGGTGGAGACATCGGAACTAGCGAGGATTAGGCAAGGGCAAG
CATAGAGAATGTACCGCGAGGAGGTGAAACTCAGCCAGTTTCTTAATGGA
CTTTAAAAATGGCTTTTAAATAAGATTTTACTCTGTGGTTCATTTTTCTC
TTTCTTCCCTTCTTTTCTTCTTCCTCCCTCCCCCCTTCTTTGTGACCGAG
TCTAACTCTGTAGCCTTGGCTAGCCTGGAACAGTTTGTGTAGACTGGCCT
CAGTGTTACAGAGATATGCTGCCCCTGCTCCCTGAGTGCTCTGATTAAAG
GTGTTTGTCGCCACAGCCAGCGGCTCTGTAAGTCTTAAACTTACCTTTAA
CCTAACAGCAATTTGAACTGGCCATGGATTTGACCCGGCACAGTGAAGCC
TGTGTGCTCTGCCACACACAGTTCTTTCCTGTAGCTGTGTCTCATGAACC
ATGACACAGTATGACAGCCAGGAGACAGATTCTGGTGGAATGGAACGTGT
GCACGTCTGTCGCCTTTCATCACTTGCAGAGCCTTTAGGAGACGCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b06.b1 MSMg01no545_b06.b1 CHROMAT_FILE:
MSMg01no545_b06.b1 PHD_FILE: MSMg01no545_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:57 2005
         (618 letters)



>mm_chr6_136974158_136975175
          Length = 1018

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggatggggagcacagcctaaagtcctaaccatctctagaaagtcctgcatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaattcagggatggggagcacagcctaaagtcctaaccatctctagaaagtcctgcatgc 268

                                                                       
Query: 65  caacgctgttaaacgtgcatgttttccagccttccttttcaggtacacattcaaactctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caacgctgttaaacgtgcatgttttccagccttccttttcaggtacacattcaaactctg 208

                                                                       
Query: 125 tcattctcctcatgacccttcaagcacaggtccttctcacaggcacggtgcacgcatttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tcattctcctcatgacccttcaagcacaggtccttctcacaggcacggtgcacgcatttc 148

                                                                       
Query: 185 atctcacaaaccccagaggcttcacaagctccagccttgactcaaaaggcccggagtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atctcacaaaccccagaggcttcacaagctccagccttgactcaaaaggcccggagtcca 88

                                                                       
Query: 245 gactcttatcccagtcaaataaggatgagactggaggcatgactcatcctgagcgcattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gactcttatcccagtcaaataaggatgagactggaggcatgactcatcctgagcgcattt 28

                                      
Query: 305 ctccccagctgggagcctgagaagtta 331
           |||||||||||||||||||||||||||
Sbjct: 27  ctccccagctgggagcctgagaagtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no545_b06.g1 MSMg01no545_b06.g1 CHROMAT_FILE:
MSMg01no545_b06.g1 PHD_FILE: MSMg01no545_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:57 2005
         (612 letters)



>mm_chr6_136807353_136808364
          Length = 1012

 Score = 1183 bits (612), Expect = 0.0
 Identities = 612/612 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattctctgtccctgtctcaggagtgctgggattacagatgtgctcaagagctccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgattctctgtccctgtctcaggagtgctgggattacagatgtgctcaagagctccaaa 260

                                                                       
Query: 61  cttaagataaagccatgtttactgtttcccactaatacctaatacttgacaaaattgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaagataaagccatgtttactgtttcccactaatacctaatacttgacaaaattgact 320

                                                                       
Query: 121 agctgctcaggatcagaataggtgcataggtggagacatcggaactagcgaggattaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgctcaggatcagaataggtgcataggtggagacatcggaactagcgaggattaggc 380

                                                                       
Query: 181 aagggcaagcatagagaatgtaccgcgaggaggtgaaactcagccagtttcttaatggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggcaagcatagagaatgtaccgcgaggaggtgaaactcagccagtttcttaatggac 440

                                                                       
Query: 241 tttaaaaatggcttttaaataagattttactctgtggttcatttttctctttcttccctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaaaatggcttttaaataagattttactctgtggttcatttttctctttcttccctt 500

                                                                       
Query: 301 cttttcttcttcctccctccccccttctttgtgaccgagtctaactctgtagccttggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttcttcttcctccctccccccttctttgtgaccgagtctaactctgtagccttggct 560

                                                                       
Query: 361 agcctggaacagtttgtgtagactggcctcagtgttacagagatatgctgcccctgctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctggaacagtttgtgtagactggcctcagtgttacagagatatgctgcccctgctcc 620

                                                                       
Query: 421 ctgagtgctctgattaaaggtgtttgtcgccacagccagcggctctgtaagtcttaaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgagtgctctgattaaaggtgtttgtcgccacagccagcggctctgtaagtcttaaact 680

                                                                       
Query: 481 tacctttaacctaacagcaatttgaactggccatggatttgacccggcacagtgaagcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacctttaacctaacagcaatttgaactggccatggatttgacccggcacagtgaagcct 740

                                                                       
Query: 541 gtgtgctctgccacacacagttctttcctgtagctgtgtctcatgaaccatgacacagta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgctctgccacacacagttctttcctgtagctgtgtctcatgaaccatgacacagta 800

                       
Query: 601 tgacagccagga 612
           ||||||||||||
Sbjct: 801 tgacagccagga 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)