Query= MSMg01no545_c19.b1 MSMg01no545_c19.b1 CHROMAT_FILE:
MSMg01no545_c19.b1 PHD_FILE: MSMg01no545_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:05 2005
(694 letters)
>mm_chr6_109518009_109519102
Length = 1094
Score = 1015 bits (525), Expect = 0.0
Identities = 665/775 (85%), Gaps = 102/775 (13%)
Strand = Plus / Minus
Query: 5 gaattctgggaaagagtcaagcaaaa-gatttttctaactagacttgaaggagagggata 63
|||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||
Sbjct: 762 gaattctgggaaagagtcaagcaaaatg-tttttct--ccagacttgaaggagagggata 706
Query: 64 tatgaaacttgaaactaaggagaggtaacttaccatgtaacacacatagactagaacaaa 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tatgaaacctgaaactaaggagaggtaacttaccatgtaacacacatagactagaacaaa 646
Query: 124 aagttacaagctactcaaggaacaagcccaagtttatggcttagatatttattcataaat 183
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 645 aagttacaagctactcagggaacaagccaaagtttatggcttagatatttattcataaat 586
Query: 184 aagtagcctctcagttattaatcaagaattggggcacaaatgaaaagcctgcttttgtaa 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 585 aagtagcctctcagttattaatcaagaattggggcacagatgaaaagcctgcttttgtaa 526
Query: 244 ttggcatctgatatgttaggcagaaatccaagtagtagggtcctgtaagctcacaaaacc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttggcatctgatatgttaggcagaaatccaagtagtagggtcctgtaagctcacaaaacc 466
Query: 304 gggcacagaaacagcagcttctgggtagaaaaagatggttccttagcaaccagagtttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggcacagaaacagcagcttctgggtagaaaaagatggttccttagcaaccagagtttct 406
Query: 364 caggcaggtccagtgctcatgaatactttaacagacagacagacagaca----cagacac 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 405 caggcaggtccagtgctcatgaatactttaacagacagacagacagacagacacagacac 346
Query: 420 acagacacacacagacacacacacacatacaca--------------------------- 452
||||||||||||||||||||||||||| |||||
Sbjct: 345 acagacacacacagacacacacacacacacacagacacacacacacacacacacacacac 286
Query: 453 -----------------------------------------------ccagtgtagcatg 465
|||||||||||||
Sbjct: 285 agacacacacacacacacacacacacacacacacacacacacacacaccagtgtagcatg 226
Query: 466 gttggccatctgatacttgaccagagggccatgggccgcatcatgtatggcaggaaaaga 525
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 225 gttggccatctgatacttgaccagagggccatgggctgcatcatgtatggcaggaaaaga 166
Query: 526 cagga----------gcacatgttggcctcaggagcttgtttacagccatccctgaatta 575
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 caggaaaagacaggagcacatgttggcctcaggagcttgtttacagccatccctgaatta 106
Query: 576 gaggcttggcataaagtggcaagaggcagcatgccagtctaaggccataaacacgtagag 635
||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 105 gaggcttggcataaagtggca----------tgccagtctaaggccataagcacgtagag 56
Query: 636 ggctgaactgcctcctccctgtgagagaaaaggcaagggtggggctagtcataac 690
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ggctgaactgcctcctccctgtgagagaaaaggcaagggtggggctagtcataac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_c19.g1 MSMg01no545_c19.g1 CHROMAT_FILE:
MSMg01no545_c19.g1 PHD_FILE: MSMg01no545_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:05 2005
(595 letters)
>mm_chr6_109358684_109359682
Length = 999
Score = 980 bits (507), Expect = 0.0
Identities = 561/599 (93%), Gaps = 34/599 (5%)
Strand = Plus / Plus
Query: 1 ttgagacaaaattgctatgctagtagaggatgtcttaggcaacttaagtttaccaacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttgagacaaaattgctatgctagtagaggatgtcttaggcaacttaagtttaccaacact 290
Query: 61 atatatatatatatatatatacatatatatatatatatatgaaatttcaacatctggagt 120
|||||||||| ||||||||||||||||||||
Sbjct: 291 atatatatat------------------------------gaaatttcaacatctggagt 320
Query: 121 ctggaagaaacacactaagatcatgatatataatataaatcagagtcatgattagatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaagaaacacactaagatcatgatatataatataaatcagagtcatgattagatgaa 380
Query: 181 cagccctttgcatgtatgttggtacctatgttaagttcttcctctactgtagtattcaga 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccctttgcatatatgttggtacctatgttaagttcttcctctactgtagtattcaga 440
Query: 241 tactttcctctatctttataagcagaatacaggactggtcaggggacatggcacatggag 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttcctctatctttataagcagaatacaggactggtcaggggacatggcacatggag 500
Query: 301 tcagtgtctcattctgttacccc-gcacttgacttcccacaaagctagagggtgacacta 359
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtgtctcattctgttccccccgcacttgacttcccacaaagctagagggtgacacta 560
Query: 360 ttcttcagatttttgtagacaacgggagataattcatggtcaaaagagagaaagggacaa 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttcagatttttgtagacaacaggagataattcatggtcaaaagagagaaagggacaa 620
Query: 420 tcacatgtcggttattagcagctaattaatccagtcagtgcactgatataagaagtgtaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacatgtcggttattagcagctaattaatccagtcagtgcactgatataagaagtgtaa 680
Query: 480 aattctaatgaa--cacacgggtctgcatctctgtaatagaaaaaaaaa-ctaatgagaa 536
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 aattctaatgaatacacacgggtctgcatctctgtaatagaaaaaaaaaactaatgagaa 740
Query: 537 caaaatatcatatctgaaatcagttaatgaatagtacatggacctggtcatgccaatga 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaaatatcatatctgaaatcagttaatgaatagtacatggacctggtcatgccaatga 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 999
Length adjustment: 10
Effective length of query: 585
Effective length of database: 989
Effective search space: 578565
Effective search space used: 578565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
