Query= MSMg01no545_k03.b1 MSMg01no545_k03.b1 CHROMAT_FILE:
MSMg01no545_k03.b1 PHD_FILE: MSMg01no545_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:39 2005
(684 letters)
>mm_chr6_23206816_23207899
Length = 1084
Score = 1265 bits (654), Expect = 0.0
Identities = 682/696 (97%), Gaps = 12/696 (1%)
Strand = Plus / Plus
Query: 1 gagattagtgggcttttccttactttgaactttttcccctgtaaaatggggctaacattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagattagtgggcttttccttactttgaactttttcccctgtaaaatggggctaacattt 248
Query: 61 tataaaagttcttttcattctcaagagacacggaaattgaaaagagatcttaaagtaaga 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tataaaagttcttttcgttctcaagagacacggaaattgaaaagagatcttaaagtaaga 308
Query: 121 taactttatgtatgaaaaagctactaccactgtttcaaaagttaggaacttttctaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taactttatgtatgaaaaagctactaccactgtttcaaaagttaggaacttttctaaatt 368
Query: 181 gttagacaaatgaattttaaaaatgacctctcagaggtagactttaggtcaaatgtgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttagacaaatgaattttaaaaatgacctctcagaggtagactttaggtcaaatgtgtgg 428
Query: 241 aagtgttgaaaacagacacaagaattgaatttataaataattttctttacaaccgcaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aagtgttgaaaacagacacaagaattgaatttataaataattttctttacaaccgcaagg 488
Query: 301 acttttttttttccc--ttggggtctcccctcccatattcagccctgtattgcccagaaa 358
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acttttttttttcccccttggggtctcccctcccatattcagccctgtattgcccagaaa 548
Query: 359 acactctcttcgatatcttcagaattaactctcacaaaaagccctaaaaaaaaaaa---- 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acactctcttcgatatcttcagaattaactctcacaaaaagccctaaaaaaaaaaaaaaa 608
Query: 415 --gaaaagaaaaaaaaa-gccagtttgcttacagtagatttcacttcttttgaaccaatt 471
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagaaaagaaaaaaaaaagccagtttgcttacagtagatttcacttcttttgaaccaatt 668
Query: 472 acacgttcccaacgttaatcaacctcccatagacgactcttattactgaaagaacacatc 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 669 acacgttcccaacgttaatcaacctcccatagatgactcttattactgaaagaacacatc 728
Query: 532 ttgtcatcatacaatgtaacaacaacaacaacaacaac--caaa-ctacagtgtttgaat 588
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 729 ttgtcatcatacaatgtaacaacaacaacaacaacaacaacaaaactacagtgtttgaat 788
Query: 589 aaatgacaatgaatgaacttcctccatacaataactttgaggcaacttaaaaaaattgtt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaatgacaatgaatgaacttcctccatacaataactttgaggcaacttaaaaaaattgtt 848
Query: 649 atcaggttattgatcccggaggacctaatgaaaaca 684
||||||||||||||||||||||||||||||||||||
Sbjct: 849 atcaggttattgatcccggaggacctaatgaaaaca 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_k03.g1 MSMg01no545_k03.g1 CHROMAT_FILE:
MSMg01no545_k03.g1 PHD_FILE: MSMg01no545_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:40 2005
(593 letters)
>mm_chr6_23390986_23391978
Length = 993
Score = 1123 bits (581), Expect = 0.0
Identities = 590/593 (99%)
Strand = Plus / Minus
Query: 1 tgtgactaaatgtctgaaatatatatatgccagtactccgacaactttttgaagtttcga 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 793 tgtgactaaatgtctgaaatatatatatgccagtactctgacaactttttgaagtttcga 734
Query: 61 acacaattgaatcttctttccaattccaaatgtaatgggaagacaaattgaaagcgctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 acacaattgaatcttctttccaattccaaatgtaatgggaagacaaattgaaagcactca 674
Query: 121 ctttgaaatcaagatggatatgtatggagatgcgatgagagtgacccattgggaggaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctttgaaatcaagatggatatgtatggagatgcgatgagagtgacccattgggaggaaca 614
Query: 181 gggtagtttttattagtgtttttaaagacatctctcattctatctgcacacagcttgtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggtagtttttattagtgtttttaaagacatctctcattctatctgcacacagcttgtac 554
Query: 241 atccatacctgcaggctgcattattgaaaggtgaaggagacatttttcctagggaggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atccatacctgcaggctgcattattgaaaggtgaaggagacatttttcctagggaggaca 494
Query: 301 gtataccctgctgtgtctgctgctgccatcggcacaatggtgctctggtgataatgtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtataccctgctgtgtctgctgctgccatcggcacaatggtgctctggtgataatgtgaa 434
Query: 361 tctcatcaccacgtgtgagtgtggattatgtgagtgatacagctggaaacctagccatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctcatcaccacgtgtgagtgtggattatgtgagtgatacagctggaaacctagccatca 374
Query: 421 gcccaagaatttgtactcataaaaattgattgagagtcaggtttggccagctgcaaagtc 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 373 gcccaagaatttgtactcataaaaattgattgcgagtcaggtttggccagctgcaaagtc 314
Query: 481 attgttccaagtgagcactcgaggagccactgaggtgaaaagacttttcaaagactcgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 attgttccaagtgagcactcgaggagccactgaggtgaaaagacttttcaaagactcgta 254
Query: 541 taaacatgaaaatctgaggcaaaaatgtcaatttaaattagagtcaaaaaatc 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taaacatgaaaatctgaggcaaaaatgtcaatttaaattagagtcaaaaaatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
