BAC Information

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BAC

Clone NameMSMg01-545O11
Chromosome6 (Build37)
Map Location 48,045,984 - 48,046,412
singlet/doubletsinglet
Overlap geneZfp746
Upstream geneCntnap2, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O11.T7 (MSMg01no545_o11.b1)MSMg01-545O11.TJ (MSMg01no545_o11.g1)
ACCAG610854AG610855
length727745
length of high quality
(start - end)
267 (37 - 303)423 (66 - 488)
definitionCHROMAT_FILE: MSMg01no545_o11.b1 PHD_FILE: MSMg01no545_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:00 2005CHROMAT_FILE: MSMg01no545_o11.g1 PHD_FILE: MSMg01no545_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGC
TTTCCGATACTAGCTCGGGCGAGACTTGGGCTCATGTAGAAGGCAGTTGG
CCTGCTCAGGAGCTAATTCAGTTTAGCAATAATCGCGCCTCGGATAAACC
TCATTGGCTACCATACTGCCACTGCGCAAAGCTCAGGAGCTAATTCAGGA
TAGCAGTGTTAGTAGGCTCAGGGTCTGCGGCTGCTCTGCTCCTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGGAAAAGTTTTT
CAGGGATGGGCCTAAAAAGCTGCATGGCTGTAAAAGGCATCTTACCAGTC
AGGTCTGGGAACTTCTGGAAAGTAAATCTGGGAGCATCTCTAATTTAACT
TTGTAGTCCCTCCTAATTTATCACCCCCCCAATGATGATTATTAACTGGG
TATACTGGTACTAGTGGGGGTATAACTCAAGGGTAAAGTATTTGGCTGCA
AATAAAGAAGTCCCTGGTTCAAATCCAGGTGCCCCCTTTTTATGTGATTT
TGGGAACCATCTACATTCATGGGATAAAAGCACTTTTCCTCTTGACTCAT
GGCTGGAGATTCAACCCATTGATGCTACAACTGTGTTAATCACCCATCAG
GGCCTTCATGTAACAACTGGTACTGTGTGCTCCTTGAATCTCAAGTCTTT
CTTAATAACAAGTGTTCAAGGTTTTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGATAGAACCCCCTGCTAGTTCAGGCTTCCTCCAC
AGGGCAAAGGCCTGAGCTCTCCAGGACAGAAAAGGGGCCACTTTGCTCCA
GCAGGCAGGAAGAATGTCATGAGAGAATAATCAGGTGGGCCTGTATTTAA
GTAAACTTTAAATGTGAAAAAAATCCAGACACATGAAAAAGTATCAGTTT
GTGTTTAGATTTTAAAAAAAGTTCAGTAATTTCCCCATAACAAATGTCAT
TTAAGCTCTTAATTAAAACAATGCTTCTTAGAAGGAGATTCACAAGACCC
AGGAAGCTAATGAAACTTACAAGGCCCAGGAAGCCCACCAAGTCACAAGA
CTGATAGCCCCTCCCCTAAGTTGAGACAAGCAGTAACTGATGCTGGGGGG
ACGGAGCACAGTCTCTGATGATGCTGACTGCAATGTGTGCAAGATCTCCA
GGAACGCAGCTTCTCTGAGACCTCCCCATGTTAGTGTGGGTATCTGGTGG
TACAGCTGCATCCGAGTCCTGTATGTGATCCCAATTAAACTCATTGGCTC
ACCCATCTAGACTAGGGTGGAAAGAGTTCTTTGGTAATATCCTCTGGGGG
TGGAATAGATGTTTTGGTCATATCTTTCCCAGGAAAAGTCTCATTATGGA
GCTAAACTCCTTCTTGGGCTTTTGAAGAATAAAGGGCCTTAAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o11.g1 MSMg01no545_o11.g1 CHROMAT_FILE:
MSMg01no545_o11.g1 PHD_FILE: MSMg01no545_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:01 2005
         (423 letters)



>mm_chr6_48045791_48046612
          Length = 822

 Score =  754 bits (390), Expect = 0.0
 Identities = 417/430 (96%), Gaps = 8/430 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatagaaccccctgctagttcaggcttcctccacagggcaaaggc-------ctgagct 53
           |||||||||||| |||||||||||||||||||||||||||||||||       |||||||
Sbjct: 194 ggatagaaccccgtgctagttcaggcttcctccacagggcaaaggctttaggcctgagct 253

                                                                       
Query: 54  ctccaggacagaaaaggggccactttgctccagcaggcaggaagaatgtcatgagagaat 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctccaggacagaaaaggggccactttgctccagcaggcaggaagaatgtcatgagagaat 313

                                                                       
Query: 114 aatcaggtgggcctgtatttaagtaaactttaaatgtgaaaaaaatccagacacatgaaa 173
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 314 aatcaggtgggcctgtatttaagtaaactttaaatgtgaaaaaaatccaaacacatgaaa 373

                                                                       
Query: 174 aagtatcagtttgtgtttagattttaaaaaaagttcagtaatttccccataacaaatgtc 233
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 374 aagtatcagtttgtgtttagatta-aaaaaaagttcagtaatttccccataacaaatgtc 432

                                                                       
Query: 234 atttaagctcttaattaaaacaatgcttcttagaaggagattcacaagacccaggaagct 293
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atttaagctctaaattaaaacaatgcttcttagaaggagattcacaagacccaggaagct 492

                                                                       
Query: 294 aatgaaacttacaaggcccaggaagcccaccaagtcacaagactgatagcccctccccta 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 493 aatgaaacttacaaggcccaggaagcccaccaagtcacaagactgatagcccctctccta 552

                                                                       
Query: 354 agttgagacaagcagtaactgatgctggggggacggagcacagtctctgatgatgctgac 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agttgagacaagcagtaactgatgctggggggacggagcacagtctctgatgatgctgac 612

                     
Query: 414 tgcaatgtgt 423
           ||||||||||
Sbjct: 613 tgcaatgtgt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)