Query= MSMg01no546_a13.b1 MSMg01no546_a13.b1 CHROMAT_FILE:
MSMg01no546_a13.b1 PHD_FILE: MSMg01no546_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:11 2005
(699 letters)
>mm_chr6_33368829_33369932
Length = 1104
Score = 1280 bits (662), Expect = 0.0
Identities = 689/700 (98%), Gaps = 5/700 (0%)
Strand = Plus / Plus
Query: 5 gaattccaacttaccaggacaaaagttgaagactgtgaaaaatgctgtctttcagccctc 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattgcaacttaccaggacaaaagttgaagactgtgaaaaatgctgtctttcagtcctc 264
Query: 65 aagtgtttggcagaaggaatttgtcaatctgtacgcataaggttcagggacatggaaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgtttggcagaaggaatttgtcaatctgtacgcataaggttcagggacatggaaata 324
Query: 125 aatacatatgcaaagtcacactaacacccctaacggtctgcttaataaagttgaataatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatacatatgcaaagtcacactaacacccctaacggtctgcttaataaagttgaataatg 384
Query: 185 ctgttacgctttctaaatctgttctttgatgattctgcacatgtagataatgtcatcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgttacgctttctaaatctgttctttgatgattctgcacatgtagataatgtcatcaga 444
Query: 245 tctctcttagcatctcatactccacacaccgttctcaactactccccccactcatcccca 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctctcttagcatctcacactccacacaccgttctcaactactccccccactcatcccca 504
Query: 305 caggtaccttccccacatttctgtgttttattttgtgatccattgagtttaacccagacc 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 caggtaccttccccacatttctgtgttttattttgtgacccattgagtttaacccagacc 564
Query: 365 aaccatgaggccatggactggtagttaggcactgaagcagggtgagctcagtagaggctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaccatgaggccatggactggtagttaggcactgaagcagggtgagctcagtagaggctc 624
Query: 425 ta-atgtaaagata----ctgctacccttccagaaaccaacagtaatcaggagttttaca 479
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 tacatgtaaagataataactgctacctttccagaaaccaacagtaatcaggagttttaca 684
Query: 480 gaatggcataacaccttctgtgccctgtctgatacatgactggcagacaatagggctatt 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatggcataacatcttctgtgccctgtctgatacatgactggcagacaatagggctatt 744
Query: 540 cttgtacacatttagtataggcaaccacagatgctatcagatcatggttgggatggctgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgtacacatttagtataggcaaccacagatgctatcagatcatggttgggatggctgt 804
Query: 600 gtcatgccatcaactaattctgatgggcagtcaagaaatataacaagaatatgattgttt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtcatgccatcaactaattctgatgggcagtcaagaaatataacaagaatatgattgttt 864
Query: 660 tggggaatacctggggcctccctgaccaccaactcataac 699
||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tggggaatacctggggcctccctgaccaccaactcataac 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1104
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1094
Effective search space: 753766
Effective search space used: 753766
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_a13.g1 MSMg01no546_a13.g1 CHROMAT_FILE:
MSMg01no546_a13.g1 PHD_FILE: MSMg01no546_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:11 2005
(322 letters)
>mm_chr6_33557876_33558597
Length = 722
Score = 615 bits (318), Expect = e-180
Identities = 321/322 (99%)
Strand = Plus / Minus
Query: 1 actatcagaaattactttggaaaagggcaataaaatcagatttatggaactacgtcatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 actatcagaaattactttggaaaagggcaataaaatcagatttatggaactacgtcatag 463
Query: 61 taggactttatattctcataaatggaaaggccatattttctgtctataatccagggagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taggactttatattctcataaatggaaaggccatattttctgtctataatccagggagat 403
Query: 121 gtagagggcagaaggaaatgtattgccaaatgatgttgctgaagaggaaaatgtgctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtagagggcagaaggaaatgtattgccaaatgatgttgctgaagaggaaaatgtgctgtg 343
Query: 181 agtatctgagaagcagacattgaggccagtgtgtgcaggtcacagctgtactcgcagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtatctgagaagcagacattgaggccagtgtgtgcaggtcacagctgtactcgcagatg 283
Query: 241 agcttttagtccacagccaatctgaccacttagcatctcacaggcaactcttggaacgcc 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agcttttagtccacagccactctgaccacttagcatctcacaggcaactcttggaacgcc 223
Query: 301 catggtttagctgtaaatacac 322
||||||||||||||||||||||
Sbjct: 222 catggtttagctgtaaatacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
