BAC Information

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BAC

Clone NameMSMg01-546A20
Chromosome6 (Build37)
Map Location 48,045,976 - 48,046,652
singlet/doubletsinglet
Overlap geneZfp746
Upstream geneCntnap2, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546A20.T7 (MSMg01no546_a20.b1)MSMg01-546A20.TJ (MSMg01no546_a20.g1)
ACCAG610968AG610969
length749750
length of high quality
(start - end)		674 (36 - 709)662 (66 - 727)
definitionCHROMAT_FILE: MSMg01no546_a20.b1 PHD_FILE: MSMg01no546_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:13 2005CHROMAT_FILE: MSMg01no546_a20.g1 PHD_FILE: MSMg01no546_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAT
AGAACCCCCTGCTAGTTCAGGCTTCCTCCACAGGGCAAAGGCCTGAGCTC
TCCAGGACAGAAAAGGGGCCACTTTGCTCCAGCAGGCAGGAAGAATGTCA
TGAGAGAATAATCAGGTGGGCCTGTATTTAAGTAAACTTTAAATGTGAAA
AAAATCCAGACACATGAAAAAGTATCAGTTTGTGTTTAGATTTTAAAAAA
AGTTCAGTAATTTCCCCATAACAAATGTCATTTAAGCTCTAAATTAAAAC
AATGCTTCTTAGAAGGAGATTCACAAGACCCAGGAAGCTAATGAAACTTA
CAAGGCCCAGGAAGCCCACCAAGTCACAAGACTGATAGCCCCTCCCCTAA
GTTGAGACAAGCAGTAACTGATGCTGGGGGGACGGAGCACAGTCTCTGAT
GATGCTGACTGCAATGTGTGCAAGATCTCCAGGAACGCAGCTTCTCTGAG
TCCTCCCCATGTTAGTGTGGTTATCTGGTGGTACAGCTGCATCCGAGTCC
TGTATGTGATCCCAATAAACTCATTGGCTCACCCATCTAGACTAGGGTGG
AAGAGTTCTTTGGTATTATCTCTGGGGGTGGATAGATGTTTGTTCATATC
TTCCCAGGAAAAGTCACATAATGACTAAGCTCTTCATGGCTTTTGAGAAT
AATGGCCTAGGTATAAAAAGTTGAGTTTTTCCACTGAGTAGTTCGGGAA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCACTGAACCCATCTGGTCCTGGGCATTTTGAGG
TTGGGAGACTATTAATGGCTGCTTCTATTTCTTTAGGAATTATGAAACTG
TTTAGATGATTTTTCTGATCCTGTTTTAACTTTGTTACCTGGTACGTGTC
TAGAAAATTGTCCATTTCATACAGATTTTACAATTTAGTTGAGTATAAAC
TTTTGTAGTTTAATCTGATACTTTTTTGGATTTCCATGGTTTCCATTGTT
ATGTCTCCCTTTTCACTTCTGGTTTTATTAATTTTTATACTGTCTGTGTG
CCCACTTGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAA
AGAACCAGCTCCTGGTTTTGTTGATTCTTTGTATAGTTCTTTTTTGTTTC
TATGTGGTTGATTTTGGCCCTGAGTTTGATTATTTCCTGCTGTCTGTTCC
TCTTGGGTGTATTTGCTTCTTTTTGTTCTAGAACTTTCAGGTATGCTGTC
AAGCCACTAATATAAGCCCTCTCCAGTTTCTTTTTGGAGGCACTTAGAGC
TATGAGTTTTCCTCTCACCACTGCTTTCATTGTGTCCCATTGGTATGATG
TTTCCTCATTTTCACAAAATTCTAAAAAGTCTTTAATTTCCTTCTCTATT
TCTTCCTTGNACAAGTTGTCATTGAGTAGAGCACTTTTCAGCTTCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_a20.b1 MSMg01no546_a20.b1 CHROMAT_FILE:
MSMg01no546_a20.b1 PHD_FILE: MSMg01no546_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:13 2005
         (674 letters)



>mm_chr6_48045780_48046852
          Length = 1073

 Score = 1210 bits (626), Expect = 0.0
 Identities = 662/678 (97%), Gaps = 8/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggatagaaccccctgctagttcaggcttcctccacagggcaaaggc------ 57
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||      
Sbjct: 197 ggaattcaggatagaaccccgtgctagttcaggcttcctccacagggcaaaggctttagg 256

                                                                       
Query: 58  -ctgagctctccaggacagaaaaggggccactttgctccagcaggcaggaagaatgtcat 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctgagctctccaggacagaaaaggggccactttgctccagcaggcaggaagaatgtcat 316

                                                                       
Query: 117 gagagaataatcaggtgggcctgtatttaagtaaactttaaatgtgaaaaaaatccagac 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 317 gagagaataatcaggtgggcctgtatttaagtaaactttaaatgtgaaaaaaatccaaac 376

                                                                       
Query: 177 acatgaaaaagtatcagtttgtgtttagattttaaaaaaagttcagtaatttccccataa 236
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 377 acatgaaaaagtatcagtttgtgtttagatta-aaaaaaagttcagtaatttccccataa 435

                                                                       
Query: 237 caaatgtcatttaagctctaaattaaaacaatgcttcttagaaggagattcacaagaccc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 caaatgtcatttaagctctaaattaaaacaatgcttcttagaaggagattcacaagaccc 495

                                                                       
Query: 297 aggaagctaatgaaacttacaaggcccaggaagcccaccaagtcacaagactgatagccc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aggaagctaatgaaacttacaaggcccaggaagcccaccaagtcacaagactgatagccc 555

                                                                       
Query: 357 ctcccctaagttgagacaagcagtaactgatgctggggggacggagcacagtctctgatg 416
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctctcctaagttgagacaagcagtaactgatgctggggggacggagcacagtctctgatg 615

                                                                       
Query: 417 atgctgactgcaatgtgtgcaagatctccaggaacgcagcttctctgagtcctccccatg 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 616 atgctgactgcaatgtgtgcaagatctccaggaacgcagcttctctgagtcctccccacg 675

                                                                       
Query: 477 ttagtgtggttatctggtggtacagctgcatccgagtcctgtatgtgatcccaataaact 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttagtgtggttatctggtggtacagctgcatccgagtcctgtatgtgatcccaataaact 735

                                                                       
Query: 537 cattggctcacccatctagactagggtggaagagttctttggtattatctctgggggtgg 596
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 736 cattggctcaccaatctagactagggtggaagagttatttggtattatctctgggggtgg 795

                                                                       
Query: 597 atagatgtttgttcatatcttcccaggaaaagtcacataatgactaagctcttcatggct 656
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 796 atagatgtttgttcatatcttcccaggaaaagtcacataatgactaagttcttcatggct 855

                             
Query: 657 tttgagaataatggccta 674
           ||||||||||||||||||
Sbjct: 856 tttgagaataatggccta 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space:   705832
Effective search space used:   705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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