BAC Information

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BAC

Clone NameMSMg01-546F01
Chromosome6 (Build37)
Map Location 4,010,320 - 4,010,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l, AI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik
Downstream geneBet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546F01.T7 (MSMg01no546_f01.b1)MSMg01-546F01.TJ (MSMg01no546_f01.g1)
ACCAG611169AG611170
length1,666719
length of high quality
(start - end)		---641 (75 - 715)
definitionCHROMAT_FILE: MSMg01no546_f01.b1 PHD_FILE: MSMg01no546_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:34 2005CHROMAT_FILE: MSMg01no546_f01.g1 PHD_FILE: MSMg01no546_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAGAGCGACTGAGTACGTCGTGCTAGATGACTATGTGTGCGAGGTGCTG
AGACAGCCGTGCAGGAGCGCGCCGTGTTCTGTACGTGCTGCGCAGNACTG
AGAGAGCCCAGCGCACGACATATGAGATATGTATGTAGCGTGCTAGTGAC
GGAGACNTGTATACGNCAGATATAGATGCAGCGCAATAGATGGAAAGTAG
CGCGAGATANTATACACGAGATGAGGAGAATATGTTTATGTGCGCCGACG
AGATGATGTGATCGTGTGTGGTATAGCGCGTGAGACGTGACTGCGCGGTA
GCGATAGTGAGCGAGGTGCCGATGTGACATGCTGCGTGCTCCTCTTCTCT
CAACGATCGACGACTCGTGAGCACTCGTTCATTGTATCAACTATGCGTGC
CAGCTTTAACCAGTTCACACCGCTATGCTATGTGTACTGTGCGCCGCGAC
TGCCGCGTGCGCTGGTGCGNCTAGTGGCTGTCTATTATTATTTAGTACTA
NGTAGAAGTCTACTATCCCGACAATNGTATAATTGACATCTGGACGATCT
NAATATCGCAGCACTCGTGGCTGCTCTCATATAGAAGATANGNGCTATTA
GATGGATGTGCTGCGTCGTGGAGAAGTCGCATGTACGCACTGCATTATCT
GTACTCCGTTCAGCGAGCGTGTCGTCTATAACACGTTACATCAATATCGT
CGTAGCGTGGTACTCGGCATGATCTCTCGATAGAGTATAGACGCGCGAGA
CGACGCCGCTATATGTTCTTATGAGTAAGTGTACACATCGCGACGCGCGC
TCGTCGAAGCGCGTGTGCCTCGGTTATATATCGCTAATGACACGTTCTCG
ACGTACACGAANGTCGCGATAATTCATCTCGAGTATGCGGACGTGCGACG
CGAGTATCGCGTATTATATTATATGAGCGNCGTATAGCGTGTCGTTACGC
GCGACTAGACACACGGTNTCATGTGTACTATCTATTGATTGGTCGTATGA
TATATTAACATATAAACACTACGCGCGCCAGTCGATGACGCGCACGACGT
ATCTGTCATCTCTGACATATAGACGCAGCTGCATTATTGATTCNNCACNT
NCGACGATATTGAATGATAGCGCATGCTANATCACACGCGACGTCAGTGC
TTGCTAGCTCGGCAGTTATTCAGAGCAACGAGTATCTGTTNATACTATCA
GCATCCGCTGCACTAATACATAAGTTTGCTCGACACTCGCTGAANAGCAC
ATGATTCGTTGTTGATNGTACGCATANCGACGTACGCATTCTCGTATCGT
ATGTCGATCTCGCATGNGATCGTAATATCGTCGCAANTCGCGCATGAAGA
NTGTGAGCTATGCNACGCTATCTGCCTCGCANCGATGTATATGAATACAT
ACTTTGCNACTCTACTCACGCGCGATGCTTACTTCACGGATATNATCATA
CGAATCACGTGCACNTGGTCGTAGAGTACTCGTACTATCGCCANANCGAC
AGACACGATCAGTGATNTATCACATGATATTTACATCTGTCTGTGTGATC
GACTCNGTCGAGTCNAGTAGAGATACGCAGCAACGAGACTGCGATGGGAT
AGCTCGCGTCGNTGCGTTTAGATTGATANCGCGTAGCACGTCAGTGATTA
CGACTGACTGAGACGN

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGTTCAGGAAGCAAAAGAGCAAGT
AGAGCTGAACAGAGAATTATTTTTTAATAAAACCTTATTATTTCTATTGC
TCTTGTTTTAGAGAGAGTGCTTTAGTGAGAGTACATAGACCCTTAGCTTT
TTACCGAGGATGAATTTTTAAGGGTACATGTGTATTCTGCATTATCACTG
TGGTGATGGAAGCAAACTACAAATTTTCAAAACCTATGGAGTTCTACTTT
CAAAAGAGTCATTTGTGCATTATGTAATTTACCTTAAAAAGTTCTGATTT
AGGAACAAGGTCTAATGGAGTAGAAATTGTAGAAAATGAATATGGTTATT
ATAAATGAGTAATACAACACTGTAGGAGGAATAAAAGGAAAAAACTAACC
TAACCTACTTTGGAAAACAGTACTCTGAATAAAGACAAATTACAAATAAT
GCCTCTTACACAGTAAATATGTTTTTCACAGAGGAATGATTCATATCTGA
GCAACAATTTTCTTCACACATTGGGATAAAGAAATGAAATATGTACTGGA
TGACTAAGACCTCCAGTTTTCTCAGTGCCTGAAATATAATAAAAAAAAAT
CAGAAATGTGGGAAAGAGACATGGACAAACCAAAGCCTGTATCTTTGCAC
TAGGGTCACAAGTGTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_f01.g1 MSMg01no546_f01.g1 CHROMAT_FILE:
MSMg01no546_f01.g1 PHD_FILE: MSMg01no546_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:34 2005
         (641 letters)



>mm_chr6_4010136_4011176
          Length = 1041

 Score = 1160 bits (600), Expect = 0.0
 Identities = 636/658 (96%), Gaps = 17/658 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgttcaggaagcaaaagagcaagtagagctgaacagagaa----------------tt 44
           ||||||||||||||||||||||||||||||||||||||||||                ||
Sbjct: 185 tgtgttcaggaagcaaaagagcaagtagagctgaacagagaaagagctgaacagagaatt 244

                                                                       
Query: 45  attttttaataaaaccttattatttctattgctcttgttttagagagagtgctttagtga 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 attttttaataaaaccttattatttctattgctcttgttttagagagagtgctttagtga 304

                                                                       
Query: 105 gagtacatagacccttagctttttaccgaggatgaatttttaagggtacatgtgtattct 164
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 305 gagtacatagacccttagctttttatcgaggatgaatttttaagggtacgtgtgtgttct 364

                                                                       
Query: 165 gcattatcactgtggtgatggaagcaaactacaaattttcaaaacctatggagttctact 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcattatcactgtggtgatggaagcaaactacaaattttcaaaacctatggagttctact 424

                                                                       
Query: 225 ttcaaaagagtcatttgtgcattatgtaatttaccttaaaaagttctgatttaggaacaa 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcaaaagagtcatttgtgcattatgtaatttaccttaaaaagttctgatttaggaacaa 484

                                                                       
Query: 285 ggtctaatggagtagaaattgtagaaaatgaatatggttattataaatgagtaatacaac 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtctaatggagtagaaattgtagaaaatgaatatggttattataaatgagtaatacaac 544

                                                                       
Query: 345 actgtaggaggaataaaaggaaaaaactaacctaacctactttggaaaacagtactctga 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 actgtaggaggaataaaaggaaaaaactaacctaacctactttggaaaacagtactctga 604

                                                                       
Query: 405 ataaagacaaattacaaataatgcctcttacacagtaaatatgtttttcacagaggaatg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ataaagacaaattacaaataatgcctcttacacagtaaatatgtttttcacagaggaatg 664

                                                                       
Query: 465 attcatatctgagcaacaattttcttcacacattgggataaagaaatgaaatatgtactg 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attcatatctgagcaacaattttcttcacacattgggataaagaaatgaaatatgtactg 724

                                                                       
Query: 525 gatgactaagacctccagttttctcagtgcctgaaatataataaaaaaaaa-tcagaaat 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 725 gatgactaagacctccagttttctcagtgcctgaaatataataaaaaaaaaatcagaaat 784

                                                                     
Query: 584 gtgggaaagagacatggacaaaccaaagcctgtatctttgcactagggtcacaagtgt 641
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 785 gtgggaaagagacatggacaaaccaaagcctgtatcgttgcactagcgtcacaagtgt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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