AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTTAGTTCTGCACCCCATTTTTTAATTGGGTTATTTGGTCTTTT
GGGGGTTAACTTATTAGGTTGTTTATGTATTTTGGATATTAGCCCTGTAT
TGTATGTAGTGTTAGTGACGATTTTTTCCCCCAATCTGTAGATTACCAAT
TTGTAATCTGTAGATTACCAATTTGTCCTTTTGACTTACAGTGGCTTTTC
AGTTTCATGAGGTACCATTTTGATTCTAGAGCCTGAGCCATTGGTGTTCT
ATTCTTTGCTACTTTCTCTTCTATTAGATTCACTGTATCTGGTTTTATGT
TGAGGTCCTTGATCCACTTGGACTTGAGCTTTTTGCAAGGTGACAAATAT
GGGTCTATTTTCATTTTTCTACATATAGACAGCCAGTACAATTCTAAAAT
TTAAATATATATAATATATATGTAATATATACAGGAAAACTGATGTGTTA
TAAAGAAGCTGGTGAATATCTTACATATAATAGAAATGCGCATTTTGTTC
TGACTTTTCATGTGAAATTTCCATGTGTTGTTTTATGTGAAATATTTTTA
AAGATATGCTAAGTCATTTATGTACAATACTTTTTATTATATATTATGAT
ATCACCTTCTTCTTTACTAGACTATAACTCGTGTTCTGTCGATTTAAAAA
CAGCTGTTTTTGGTTAGACGTTTGTTAACCTGAGTGCATG

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTAAAAACAAGGATTGCACCTGCACTG
GTCCAATCTCAGCTATTCAGGAGGCTAAGGCAGGAAGATTGTGAACTCAA
CAACTGTCTGGGCTGTAGAATGAGTTCAAGGCCAGCTTGTGCAGTTTAGT
GAGACCCTGTTTCAAAATAAGAAGTAAAAAGAAACCTGGGAATATTTCTG
TGATGGTTTGAATATGCTTGGCCCAGCAAGTGGCATGATTAGGAGGTGTG
GCCTTGTTGTAATAAGTGTGTCACTGTAGGGGATGGGCTTTGAGACCATC
TTCCTAGCCATGTGGGAGCTAGTCTGCTTATGGCTTCCTTTGGATGAAGA
TATAGAACTTTCAGATCCCCCAGCCCCATGTCGGCTTGGACGCTGCCATG
CTTCTGTTACAATGATAATGGACTGAACCTCTAAACCTGTAAGCCAACCC
CAATTAAAAGTTTTCCTTTGCCTGGCATTGGTGGGACATGCCTTTAATCT
CAGAACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCT
GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACGCTG
TTTTGGAAAAAGAAGAAAAAGTTTTCCTTTATAAGAGTTGACTTGGTTAT
GGTGGCTGTTCACAGCACCAAAACAGAAACTAAAAN

Query= MSMg01no546_f11.b1 MSMg01no546_f11.b1 CHROMAT_FILE:
MSMg01no546_f11.b1 PHD_FILE: MSMg01no546_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:36 2005
         (644 letters)



>mm_chr6_11974729_11975772
          Length = 1044

 Score = 1100 bits (569), Expect = 0.0
 Identities = 622/651 (95%), Gaps = 23/651 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtttagttctgcaccccattttttaattgggttatttggtcttttgggggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctgtttagttctgcaccccattttttaattgggttatttggtcttttgggggt 265

                                                                       
Query: 65  taacttattaggttgtttatgtattttggatattagccctgtattgtatgtagtgttagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taacttattaggttgtttatgtattttggatattagccctgtattgtatgtagtgttagt 325

                                                                       
Query: 125 gacgattttttcccccaatctgtagattaccaatttgtaatctgtagat--taccaattt 182
           |||||||||| |||||||||||||||||||||||||||   || | |||  ||       
Sbjct: 326 gacgattttt-cccccaatctgtagattaccaatttgtc--ctattgatggta------- 375

                                                                       
Query: 183 gtccttttgacttacagtggcttttcagtttcatgaggtaccattttgattctagagcct 242
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 -tc-ttttgacttacagtggcttttcagtttcatgaggtaccattttgattctagagcct 433

                                                                       
Query: 243 gagccattggtgttctattctttgctactttctcttctattagattcactgtatctggtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagccattggtgttctattctttgctactttctcttctattagattcactgtatctggtt 493

                                                                       
Query: 303 ttatgttgaggtccttgatccacttggacttgagctttttgcaaggtgacaaatatgggt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttatgttgaggtccttgatccacttggacttgagctttttgcaaggtgacaaatatgggt 553

                                                                       
Query: 363 ctattttcatttttctacatatagacagccagtacaattctaaaatttaaatatatataa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctattttcatttttctacatatagacagccagtacaattctaaaatttaaatatatataa 613

                                                                       
Query: 423 tatatatgtaatatat---------acaggaaaactgatgtgttataaagaagctggtga 473
           ||||||||||||||||         |||||||||||||||||||||||||||||||||||
Sbjct: 614 tatatatgtaatatatgtaatatatacaggaaaactgatgtgttataaagaagctggtga 673

                                                                       
Query: 474 atatcttacatataatagaaatgcgcattttgttctgacttttcatgtgaaatttccatg 533
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 674 atatcttacatataatagaaatgagcattttgttctgacttttcatgtaaaatttccatg 733

                                                                       
Query: 534 tgttgttttatgtgaaatatttttaaagatatgctaagtcatttatgtacaatacttttt 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tgttgttttatgtgaaatatttttaaagatatgctaagtcatttatgtacaatacttttt 793

                                                              
Query: 594 attatatattatgatatcaccttcttctttactagactataactcgtgttc 644
           ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 794 attatatattatgatatcaccttcttctttactagactataactcatgttc 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)