BAC Information

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BAC

Clone NameMSMg01-546G19
Chromosome6 (Build37)
Map Location 75,752,096 - 75,752,408
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546G19.T7 (MSMg01no546_g19.b1)MSMg01-546G19.TJ (MSMg01no546_g19.g1)
ACCAG611253AG611254
length740747
length of high quality
(start - end)		699 (35 - 733)323 (65 - 387)
definitionCHROMAT_FILE: MSMg01no546_g19.b1 PHD_FILE: MSMg01no546_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:43 2005CHROMAT_FILE: MSMg01no546_g19.g1 PHD_FILE: MSMg01no546_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACATT
TTTAATAGTCCATTATGTAAATGCACCACATTTTCTGTATCCATTCCTCT
GTTGAAGGACATCTGGGTTCTTTACAGCTTCTGGCTACTATAAATAAGGC
TGCCACGAACATAGGGAGCATATGTCTTTATTGTATTTTGGAGCATCTTC
AATGTATATGCCCAGGAGTGGTATAGCTGGGTCCTCAGGTAGTACTATGT
CCAATTTTCTGAGGAAATCAGCCAAACTGATTTCCAGAGTGGTTGTACCA
ACTTGCAATCCCATCAGCAATGGAGGAGTGCTCCCCTTTCTCCACACCCT
CCCCAGCATCTGTTGTGATCTGAGTTTTTGATTTTAGTCATTCTGACTGG
TATGAGGTAGAATCTCAGGGTTGTTTTAATTTGCATTTTCCTGATGACTA
AGGATGTTGAACATTTCTTTAGGTGCTTCTCAGTCATTTGGTATTCCTCA
GTTGAGAATTCTTTGTTTAGTTCTGTACCCCAGTTTTAATAAGGTTATTT
GGTTTTCTAGAGTCGAACTTCTTGAGGGTTTTGTATATACTTGATATTAG
CCGTCTATCAGATGTATGGTTGGTAAAGATCTTTCCAAATCTGTTGGTTC
CGGTTTTGTCCTGTAGATGGTGTCCTTTGCCTTACAGAAGCTTTGAAATT
TTAAGAAGTCCCATTTTTCAGTTGGTGACTTTAGAGTATN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGTATAACCCACATTTCGCTTTACAAAACCATTGC
ATTCTATATTCCAAATTCTGTTCTATAAGATGCTGTTAATTCTCCAGACT
CTGAACGTGTTTTTTTTTTTAATGAAGAAAAGAGAATGTCTTAGCTTCAT
ATATTCTTTCTACTGCCATAAATTATTAATTATTTATTTATCTATTCATT
TATTTTTATTTGTTATGTTCTGTAAAGTTAAGAAAATGACCTATGAAATC
CATACTTTCAGTTTCTAATGAGTGAGCTCATTGAATACACAATAAGTAAA
AAGAAAGTTATAAAGACCAAGTACTGACAGATCCCTTACTAAATGCCCCG
TCGCGAATTTATGACAGCAATTCTGTGGAACGGTGATGGATGTAACGACT
ATATTGCTGTGACTAGACACCGTTGACCCAAGAAGCCTAGAGAATGACCG
GCCTATTTCAGCTGATAGATACATATCACCGATCTCATGGAGGGATATCA
TAACAATGATTGTCACAAGCAAGTTTCTTGAGTGGAACGCACAGAAGTCG
AGTTGGAAGTTGTGGAGAAGTGCTGCTTACTGAATTGATCTCCATGCCTT
GCGTACACGTACGGCGTGAGAGAGTCACAGTCACATTGATTATCAAGTCA
TTATATGCCTCACAAGGCAACCTATTGCACAATTGGCTGCTTAGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_g19.g1 MSMg01no546_g19.g1 CHROMAT_FILE:
MSMg01no546_g19.g1 PHD_FILE: MSMg01no546_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
         (323 letters)



>mm_chr6_75751896_75752617
          Length = 722

 Score =  580 bits (300), Expect = e-170
 Identities = 312/318 (98%), Gaps = 5/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtataacccacatttcgctttacaaaaccattgcattctatattccaaattctgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtataacccacatttcgctttacaaaaccattgcattctatattccaaattctgttct 260

                                                                       
Query: 61  ataagatgctgttaattctccagactctgaacgtgtttttttttttaatgaagaaaagag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ataagatgctgttaattctccagactctgaacgtg-ttttttttttaatgaagaaaagag 319

                                                                       
Query: 121 aatgtcttagcttcatatattctttctactgccataaattattaattatttatttatcta 180
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 320 aatgtcttagcttcatatattctttctactgccataaattattaa----ttatttatcta 375

                                                                       
Query: 181 ttcatttatttttatttgttatgttctgtaaagttaagaaaatgacctatgaaatccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttcatttatttttatttgttatgttctgtaaagttaagaaaatgacctatgaaatccata 435

                                                                       
Query: 241 ctttcagtttctaatgagtgagctcattgaatacacaataagtaaaaagaaagttataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctttcagtttctaatgagtgagctcattgaatacacaataagtaaaaagaaagttataaa 495

                             
Query: 301 gaccaagtactgacagat 318
           ||||||||| ||||||||
Sbjct: 496 gaccaagtattgacagat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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