BAC Information

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BAC

Clone NameMSMg01-546H14
Chromosome6 (Build37)
Map Location 12,554,957 - 12,555,291
singlet/doubletsinglet
Overlap geneThsd7a
Upstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879
Downstream geneLOC667735, LOC384350, Tmem106b, Gm467, Gm725, 1700016P04Rik, LOC100040478, Tmem168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546H14.T7 (MSMg01no546_h14.b1)MSMg01-546H14.TJ (MSMg01no546_h14.g1)
ACCAG611291AG611292
length740743
length of high quality
(start - end)		696 (39 - 734)643 (71 - 713)
definitionCHROMAT_FILE: MSMg01no546_h14.b1 PHD_FILE: MSMg01no546_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:47 2005CHROMAT_FILE: MSMg01no546_h14.g1 PHD_FILE: MSMg01no546_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTGATACTGGAGCAATATGGAGGATACATATTTGAATCAACAGCAATAT
TTGCCTGGAGGTAGGGTGAGGGAGAAGTTGGTAAGCTTGGAGGTGGGATG
AGAAGATGTTTTAGTTGGTAAAGTGCCTGCAACATTAGCTTGTACATCCA
AGTTTGATCCCTGATGGACACTGGAAATGTTAGGCATCATCATGCATACT
GTAACATTAACACTGGGGCTGAGTAGGGTGGGAGCAGGCTGATTACAGGA
ACTCTTAGGCTGCACTGTAGCTGACCAATGAGACCTGAAAGTGATAGAGA
AGGACAACAAATGGTAGTCTCAACCCACACACGTATTCTTACTCTCTCTC
TCTTTCTCATAGACACATACACACACTCTCTCTCACACACTCTCTGTCAC
ACATACAATACTCTCTCACACACATGCACACACACACTTTCTCACACACT
CTCACATTCTCTCTCTCTCTCTCTCTCACACACACACACATACATACACA
CAGTCTCTCTTCCTCTCTCTCACACATACTCTCTCTCTCTCTCTCACACA
CACACACATTCTCTTTCTCTCACAGAGAAACACATGTGCGTACACACTTT
ATACAATCACAAAACTCACTAAAAATTAAAAACAAAAGAAGCCTAAAAAT
ACCATTTGGGCAATCTCTAATAGCCTCATGGACAAATGTA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGTGATTTGTCTCAGCACCAAACAAATA
TATTGAATCTAATTGAAGAGAATGTGAGAATAGAAAGGATTGGCATAGGA
AAAATTCCGGAACAGAACACCAATGGCTCTGGGTCTATGACCCAGATAAT
TGATAAATGGGACCTCATAAAACAAAAAAGTTTCTGAAAGGAAAAGGACA
CTGTCAATAAGACAAAACTGGAATCTTCAGATAGGGAAAAATGTTTTTAC
TAACCATATATCTGATACATGGCTAATATTCAAAATATATAAAGACTTGA
AGAAGTTAGACTCAAAGGGAAAAAAACAATTGAAAAATGGGGTACAGAAC
TAAAAAGGATTCTCAACAGCAGAATCTTGAATGGCCAATATGTACTTAAA
GAAATGTTCAAAGTTCTCAGTCATTAGGAAAACACAGATCAAAACAACCC
TGAGATTCTATCTTACACGTATCATAATAGTTAAGATTAAAAACTCAAAC
TTAACACATGCTGTCGAGTAAACGGACCAAGGTGAACACTTCTTCATTGC
TAGTAGGAGTGCAAACATGTACAAACTCTTTGGAAATAAATGTGGAAATC
AATTTGGAAAACTGGGAATAGTTCTACCTCAAGACCCAGATATACCACTC
CTATGGATATACGCAAAAGATGCCCAATATCCCACAAGAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_h14.b1 MSMg01no546_h14.b1 CHROMAT_FILE:
MSMg01no546_h14.b1 PHD_FILE: MSMg01no546_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:47 2005
         (696 letters)



>mm_chr6_12554196_12555291
          Length = 1096

 Score =  466 bits (241), Expect = e-135
 Identities = 301/345 (87%), Gaps = 40/345 (11%)
 Strand = Plus / Minus

                                                                        
Query: 382  cacacactctctct----cacacactctctgtcacacatacaatactctctcacacacat 437
            ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 cacacactctctctctcacacacactctctgtcacacatacaatactctctcacacacat 1037

                                                                        
Query: 438  gcacacacacactttctcacacactctcacattctctctctctctctctctcacacacac 497
            ||||||||||||||||||||||||||||||||          ||||||||||||||||||
Sbjct: 1036 gcacacacacactttctcacacactctcacat----------tctctctctcacacacac 987

                                                                        
Query: 498  acacatacatacacacagtctctcttcctctctctcacacata--------ctctctctc 549
            |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 986  acacatacatacacacagtctctcttcctctctctcacacatactctctctctctctctc 927

                                                                        
Query: 550  tctctctcacac------------------acacacacattctctttctctcacagagaa 591
            ||||||||||||                  ||||||||||||||||||||||||| ||||
Sbjct: 926  tctctctcacacacacacacacacacacatacacacacattctctttctctcacacagaa 867

                                                                        
Query: 592  acacatgtgcgtacacactttatacaatcacaaaactcactaaaaattaaaaacaaaaga 651
            ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 866  acacatgtgcgcacacactttatacaaacacaaaactcactaaaaattaaaaacaaaaga 807

                                                         
Query: 652  agcctaaaaataccatttgggcaatctctaatagcctcatggaca 696
            |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 806  agcctaaaaataccatttgggcaatctccaatagcctcatggaca 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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