XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCACA
ACTCTCTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTT
AAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAA
ACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGAAA
ACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAAAA
AGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGGAGAT
AGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAACA
GAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCATAGAG
AACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAAC
TCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGA
TAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAAC
ATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGAT
GCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGA
AAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCACTAAAT
AAAGATAGAATACTAAAAGCAGTAAGGGAAAAAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGCAAGCTCATACACAGAGAAAGTCTTCACG
TTGGTAAAATGGCAACACCACTGAGCTGTTCTTCTTACTTTCAAACACTG
AGAAACTGGGCTTAAAATCTGCATGGAAGCTGAAGGAAACTGTCCTAATC
AAAGATTGAAAAAACTAAGTGTCTCAACTTCAAGTTGAGAAGGATAAAGC
TACAAATCATAAAAGCAGTGGTTGTCCTGTTGTAAAGATGGGCATACAGA
TCAATGGACTAGAGTGACAAGATGATTAAGTGGATAATTAAGTGGAATAT
AACCATTTCGATAATCAACATTGGAAGACCTGGCAGCTGTCCTTCTAAAG
AATGAAACTGAACACATATTTCATGCAAGATTCTGAAACTCAATAGAAGT
GTATGGAAACTTAAGTGTAAGGACAAAATATATAAGAAATACAGAAACAT
GGGCATAAATGCTTGTCATTATTGCCTTGGTAATAAGCTCTTAAATTTGA
CACTGAAAGTACAAACAACCAAATAATAATAGTGATAACTGGACTCATCT
AAACTAAAACAATTAGAGCTACAAAGATGTCCCAGCTGATTAAGTGCTAA
CAACTCCATCATGAAGCCCTGAGTTCAAGCCCAGGCACCCATGTTAAAAA
TCACAGAGCGGCCACCCATGTTTGTAATCACAGGTN

Query= MSMg01no546_j19.g1 MSMg01no546_j19.g1 CHROMAT_FILE:
MSMg01no546_j19.g1 PHD_FILE: MSMg01no546_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:58 2005
         (664 letters)



>mm_chr6_5482989_5484052
          Length = 1064

 Score = 1268 bits (656), Expect = 0.0
 Identities = 662/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcaagctcatacacagagaaagtcttcacgttggtaaaatggcaacaccactgagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcaagctcatacacagagaaagtcttcacgttggtaaaatggcaacaccactgagct 260

                                                                       
Query: 61  gttcttcttactttcaaacactgagaaactgggcttaaaatctgcatggaagctgaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttcttactttcaaacactgagaaactgggcttaaaatctgcatggaagctgaagga 320

                                                                       
Query: 121 aactgtcctaatcaaagattgaaaaaactaagtgtctcaacttcaagttgagaaggataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgtcctaatcaaagattgaaaaaactaagtgtctcaacttcaagttgagaaggataa 380

                                                                       
Query: 181 agctacaaatcataaaagcagtggttgtcctgttgtaaagatgggcatacagatcaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctacaaatcataaaagcagtggttgtcctgttgtaaagatgggcatacagatcaatgg 440

                                                                       
Query: 241 actagagtgacaagatgattaagtggataattaagtggaatataaccatttcgataatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actagagtgacaagatgattaagtggataattaagtggaatataaccatttcgataatca 500

                                                                       
Query: 301 acattggaagacctggcagctgtccttctaaagaatgaaactgaacacatatttcatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattggaagacctggcagctgtccttctaaagaatgaaactgaacacatatttcatgca 560

                                                                       
Query: 361 agattctgaaactcaatagaagtgtatggaaacttaagtgtaaggacaaaatatataaga 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 agattctgaaactcaatagaagtgtatggaaacctaagtgtaaggacaaaatatataaga 620

                                                                       
Query: 421 aatacagaaacatgggcataaatgcttgtcattattgccttggtaataagctcttaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatacagaaacatgggcataaatgcttgtcattattgccttggtaataagctcttaaatt 680

                                                                       
Query: 481 tgacactgaaagtacaaacaaccaaataataatagtgataactggactcatctaaactaa 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacaccgaaagtacaaacaaccaaataataatagtgataactggactcatctaaactaa 740

                                                                       
Query: 541 aacaattagagctacaaagatgtcccagctgattaagtgctaacaactccatcatgaagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaattagagctacaaagatgtcccagctgattaagtgctaacaactccatcatgaagc 800

                                                                       
Query: 601 cctgagttcaagcccaggcacccatgttaaaaatcacagagcggccacccatgtttgtaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctgagttcaagcccaggcacccatgttaaaaatcacagagcggccacccatgtttgtaa 860

               
Query: 661 tcac 664
           ||||
Sbjct: 861 tcac 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)