XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGAA
TATTCATGAATTCACAAGATATGGCGGTTTCAATGGCAGCATGGGAAGTG
TTCCCACTTCCTGTGATAGCCATGGTTAAAGCTGTAAAGATCTGAGAGGT
CACAGCAGAGTTCAAAAGGTTTAAGGAGTCCTGAGAGGCAGGAAAGCTAA
GAAAGGTCCAGAGAGGAAGGGGGTATAAAATCTAGACAATATAAAATGTG
GGCCATTATACACACACACACACCTAGCAACAATTGAAAAAAAAAATCCT
AGGGACCACAAGATGGCTCACAAGAGAGTGTCCACCCAGATTCAATCCTG
GGACTCACATGTCTGAAGCAAAGGTCTGACTTCCAAAAGTTGTCCTTCAC
CATCCACACAAGCACAGCGGCAAACGGGTGTGCACAAAGCAATAAATAAT
TTTAAGAGGTTAAGAAAAACTACATCAGTCCCTGTGACTATGTCTCATAC
ATAGATAAAATTGTCAAGTCTGCCAATTAACAATTAACTAGGACTGCCAT
GGTGTTAACTGTTTTGAAAACATGTTATTGAATCTGTATTCTAGATTAAT
TTTATTATGTCTTGGGACTGTAGAGATGACTCGGTCATTAAATGCTTGGT
GTGCAAACATGAGAACCTAAATTCTGACCTCAAACAGATACNTGTNNAAN
AATTAAATAAAATAAAATAAAATTAGCCCCGCAGGCACATGCCTGTTATC
TCAGCGCAAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACATCAGAGAATTTGGGAGGCTTCTTAAGAATGGGA
CAGTTTTCTTTCAACTCAGGTGTATCGCCTTTCGAAATGGTAAGTAAGTT
ATAAGGACCCAAGTAGCTCTTCCCCAGTGATGGAGTGTGCCCATCGCTAC
AGGGCTACATAGGCAGTCGGCAGGGGCTCTCCCCCACGGAGCCACACCCA
AGCTCACCAACACTTTCTGTTTGGCCCTAGCTACTTAATAAATGGGATGT
CTAGTTACTTCTTTCAGCCTGGAGACTCCATCCATATCAAAATAAAACTA
CTGAGATAATGAAGGCAACAGCCAGGAGTCCTTCGACTCGAAGAGGCCTT
TGGGGCCGTGCTCTGTTCTGATTTTGTTTGGTTCTTTTGCTGTCTAGCAT
GCTCTCTAACTCATGAGCTCAAGTGACCTTTTGCCTCCATCTTTCAACCA
GCTAGGGGCTACAGGCTGCGTTATACTTTTATTTTCTATACTGCAATGAA
AGTCAAGAAACACCAATTACCTATTAGACTGTGCCTTTGATGGGGGGCTG
GAAACATGGCTCAGTGGTCAAAAGCGCTGGCTTCTCTTACAGATCCCAGC
ATTCATGTTGGCCAGCGATCCATAATTCCAGTTCCAGGGGACCCTACTGC
CCTTTCCTGACTTCCTGACCTCCGCAGCACCAGACAGACTCGGGAGGCAG
AA

Query= MSMg01no546_j22.b1 MSMg01no546_j22.b1 CHROMAT_FILE:
MSMg01no546_j22.b1 PHD_FILE: MSMg01no546_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:58 2005
         (646 letters)



>mm_chr6_119341543_119342584
          Length = 1042

 Score = 1122 bits (580), Expect = 0.0
 Identities = 625/642 (97%), Gaps = 4/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgaatattcatgaattcacaagatatggcggtttcaatggcagcatgggaag 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgaatagccatgaattcacaagatatggcggtttcaatggcagcatgggaag 264

                                                                       
Query: 65  tgttcccacttcctgtgatagccatggttaaagctgtaaagatctgagaggtcacagcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttcccacttcctgtgatagccatggttaaagctgtaaagatctgagaggtcacagcag 324

                                                                       
Query: 125 agttcaaaaggtttaaggagtcctgagaggcaggaaagctaagaaaggtccagagaggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agttcaaaaggtttaaggagtcctgagaggcaggaaagctaagaaaggtccagagaggaa 384

                                                                       
Query: 185 gggggtataaaatctagacaatataaaatgtgggccattatacacacacacacacctagc 244
           ||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||
Sbjct: 385 gggggtataaaatctagacaatataaaatgtggtccattatacacacacac----ctagc 440

                                                                       
Query: 245 aacaattgaaaaaaaaaatcctagggaccacaagatggctcacaagagagtgtccaccca 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aacaattgaaaaaaaaaatcctagggaccacaagatggctcacaagagagggtccaccca 500

                                                                       
Query: 305 gattcaatcctgggactcacatgtctgaagcaaaggtctgacttccaaaagttgtccttc 364
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ggttcaatcctgggactcacatgtctgaagcaaagttctgacttccaaaagttgtccttc 560

                                                                       
Query: 365 accatccacacaagcacagcggcaaacgggtgtgcacaaagcaataaataattttaagag 424
           ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 accatccacacaagcaccgtggcaaacgggtgtgcacaaagcaatgaataattttaagag 620

                                                                       
Query: 425 gttaagaaaaactacatcagtccctgtgactatgtctcatacatagataaaattgtcaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaagaaaaactacatcagtccctgtgactatgtctcatacatagataaaattgtcaag 680

                                                                       
Query: 485 tctgccaattaacaattaactaggactgccatggtgttaactgttttgaaaacatgttat 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 tctgccaattaacaattaactaggactgccttggtgttaactgttttgaaaacatgttat 740

                                                                       
Query: 545 tgaatctgtattctagattaattttattatgtcttgggactgtagagatgactcggtcat 604
           |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct: 741 tgaatctgtattctagatgaattttattatgtcttgggactgtagagatgatttggtcat 800

                                                     
Query: 605 taaatgcttggtgtgcaaacatgagaacctaaattctgacct 646
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaatgcttggtgtgcaaacatgagaacctaaattctgacct 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1042
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1032
Effective search space:   656352
Effective search space used:   656352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)