BAC Information

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BAC

Clone NameMSMg01-546K05
Chromosome6 (Build37)
Map Location 129,842,598 - 129,843,199
singlet/doubletsinglet
Overlap genenone
Upstream geneClec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
Downstream geneKlra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546K05.T7 (MSMg01no546_k05.b1)MSMg01-546K05.TJ (MSMg01no546_k05.g1)
ACCAG611415AG611416
length721728
length of high quality
(start - end)
617 (32 - 648)594 (70 - 663)
definitionCHROMAT_FILE: MSMg01no546_k05.b1 PHD_FILE: MSMg01no546_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:00 2005CHROMAT_FILE: MSMg01no546_k05.g1 PHD_FILE: MSMg01no546_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAAT
TCTTGTATATATTCGATATTAGGTCTCTATCAGATTTAGTGTTGGTAAAG
ATCTTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATTGACAGTGTCTTT
TGCCTTACAGAAGCTTTACAATTTTATGAGGTCTTATTTGACAACACTTG
ATGTTATCACATGCACAGTTGGTGTTCTGTTCAGGATTTTTTTCTGCTGT
GTACTTGTATTTGAGAGCTTTCCTCATTTTCTCTTCTATTATTTTCAACA
TCCCTTCATGGTAAAAATCTTTGAAAGATTAGGACTCCAAGGTCCATACA
GAAACATAGTAAAAACAATAAACATCAAATCAGTCACCAACATCAAACTA
AATGGAAAGAAACTTGAAGCAATCCCACTAAAATCAGGAACTAGACAAAG
CTGCCCACTCTTTCTCTACCTATTTAATATAGTACTTGAATCCCAAGCCA
GAGCAATTAGACAACAAAAAGAGATTAAAGGGATACAAATTGCACTATAA
ACTGTTAAGGATCACAATATACAATTGTTAACTGTGTATCATGTGCAGAA
TTAATAAATCCCCATATATGTTTTCTTATAGTTACTAGCTTGAAAACAAA
TGGTATTCATACACCACTTCAAGTTCCATATCCCCAACATAGTTAGTCAC
ATTTAAGGATACCCTCACTGA
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTAGTTGAGGCATAGAAGATACAACA
GAAAAAATTGACACAAAACAACCAGGAAATCTGGGATACCTTGAAAATAT
CTATCCTAAAATTAATAGGAATAGAGGAAGTTAAAGAGCCTAATTCTAAG
TTCACAAATATTTTCAACAAAATCATAGAAGACAACATTCCTAACGTAAA
GAAAGAGATGCCAATAAACATAGAAGAAGCTTTTAGAATGCCAATTAGAC
TGGGCCAGAAATGAAAACACTCCCATCATATAATAATCAAAATACAAAAT
CTCCAGAGGAAATAAAGAATATTAAAAGCAACAAGGTAAAAATGGTAGCT
AACATACAAAGGCATAACGACCAGAATTGTACCCAACTTCTCCATAGACT
CAAAAAGTGAAAGGAGTCTGGGCAGATTTCTTCCAACTTATGACAAACCG
TAATTGACAATGTAGCCTATTGTACCCAGTAAAACTCTCAATCACCATAG
ATGTAGAAAAGAAGATATTTTAAGACACATTCAAATTCAAACAATATCTA
TCCACAAATCCAGCTATATAGAAAATACAAGAAGGAAAAATCCTACCTAA
CATGATAAATAATGGTATACAGGAAAACACAGTAGATAAGTAAATTCATA
CCAGGAAAAATGAGGAAATCACACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_k05.b1 MSMg01no546_k05.b1 CHROMAT_FILE:
MSMg01no546_k05.b1 PHD_FILE: MSMg01no546_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:00 2005
         (617 letters)



>mm_chr6_129842383_129843399
          Length = 1017

 Score = 1149 bits (594), Expect = 0.0
 Identities = 600/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcttgtatatattcgatattaggtctctatcagatttagtgttggtaaagatcttt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcttgtatatattcgatattaggtctctatcagatttagtgttggtaaagatcttt 275

                                                                       
Query: 76  tcccaatctgttggttgcctttttgtcttattgacagtgtcttttgccttacagaagctt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcccaatctgttggttgcctttttgtcttattgacagtgtcttttgccttacagaagctt 335

                                                                       
Query: 136 tacaattttatgaggtcttatttgacaacacttgatgttatcacatgcacagttggtgtt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tacaattttatgaggtcttatttgacaacacttgatgttatcacatgcacagttggtgtt 395

                                                                       
Query: 196 ctgttcaggatttttttctgctgtgtacttgtatttgagagctttcctcattttctcttc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgttcaggatttttttctgctgtgtacttgtatttgagagctttcctcattttctcttc 455

                                                                       
Query: 256 tattattttcaacatcccttcatggtaaaaatctttgaaagattaggactccaaggtcca 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tattattttcaacatcccttcatggtaaaaatctttgaaagattaggactccaaggtcca 515

                                                                       
Query: 316 tacagaaacatagtaaaaacaataaacatcaaatcagtcaccaacatcaaactaaatgga 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tacagaaacatagtaaaaacaataaacatcaaatcagtcaccaacatcaaactaaatgga 575

                                                                       
Query: 376 aagaaacttgaagcaatcccactaaaatcaggaactagacaaagctgcccactctttctc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aagaaacttgaagcaatcccactaaaatcaggaactagacaaagctgcccactctttctc 635

                                                                       
Query: 436 tacctatttaatatagtacttgaatcccaagccagagcaattagacaacaaaaagagatt 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tacctatttaatatagtacttgaatcccaagccagagcaattagacaacaaaaagagatt 695

                                                                       
Query: 496 aaagggatacaaattgcactataaactgttaaggatcacaatatacaattgttaactgtg 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaagggatacaaattgcactataaactgttaaggatcacaatatacaattgttaactgtg 755

                                                                       
Query: 556 tatcatgtgcagaattaataaatccccatatatgttttcttatagttactagcttgaaaa 615
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 756 tagcatgtgcagaattaataaatccccatatatgttttcttagagttactagcttgaaaa 815

             
Query: 616 ca 617
           ||
Sbjct: 816 ca 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)