Query= MSMg01no547_g14.b1 MSMg01no547_g14.b1 CHROMAT_FILE:
MSMg01no547_g14.b1 PHD_FILE: MSMg01no547_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:02 2005
(704 letters)
>mm_chr6_25321355_25322458
Length = 1104
Score = 1060 bits (548), Expect = 0.0
Identities = 662/702 (94%), Gaps = 9/702 (1%)
Strand = Plus / Plus
Query: 5 gaattctcctcatctcttcttcatcttttaaccatttctactatttggaatattgaattt 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattctcctcatctcttcttcatcttttaacgatttctactatttggaatattgaattt 264
Query: 65 tcttatttttccctaattatatcctgattttgttcctcatccccctaatttgacagaaaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttatttttccctaattatatcctgattttgttcctcatccccctaatttgacagaaa- 323
Query: 125 cagtcaagatttt-aaacaga--atgacttgatggattttgtatatatatttttaatata 181
||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 324 --gtcaagatttttaaacagagaatgacttgatgaattttgtatatat-tttttaatata 380
Query: 182 taggatggataatagataatgcctgcccagtgcatagcaaggatgttcctagattgatgt 241
|||||| || |||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 381 taggatagagaatagagaatgcctgcccagtgcatagcaaggaagttcctaggttgatgt 440
Query: 242 accttaggaagaaatgtagaaatggtaatgttctgcaaagtgtaccaccctgcttgatga 301
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |
Sbjct: 441 accttaggaagaaatgtagaaatggtaaagttctgcgaagtgtaccaccctgctcaacaa 500
Query: 302 gtattgccagaaaagaatcatcacatttaccatccagagggaaagacggtatttattcta 361
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct: 501 gtattgccagaaaagaatcatcacatttaccaactggagggaaagacggtatttattcca 560
Query: 362 ttagttctccctttttgttttatatattataccttttggttgaaaataattttcatacaa 421
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 561 ttagttctctctttttgttttatatattataccctttggttgaaaatatttttcatacac 620
Query: 422 tatattctgatcaaggcacctcaacttccaactcctccctgatcctgtctattgacccac 481
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatattctgatcaaggtacctcatcttccaactcctccctgatcctgtctattgacccac 680
Query: 482 tcacccaactccatgctttcttactttataactttttagaaaataataaagatgttcaat 541
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 681 tcacccaactccatgctttcttactttataacattttagaaaaaaataaagatgttcaat 740
Query: 542 acaaaatgaactcataggtatctttgctgacattttgtctcaaatcactttgtaaatgat 601
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 acaaaatgaactcataggtgtctttgctgacattttgtctcaaatcattttgtaaatgat 800
Query: 602 aatattagagcttaaataacaagaatggaatcaaggctgagaatctatgtcagtgacaga 661
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 801 aatattagagcttaaataacaagaatggaatcaaggctgagcatctatgccagtgacaga 860
Query: 662 atattttgctagtgtgca-aaagactcaggaccattattaaa 702
||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 861 gtattttgctagtgtgcacaaa-actcgggaccattattaaa 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no547_g14.g1 MSMg01no547_g14.g1 CHROMAT_FILE:
MSMg01no547_g14.g1 PHD_FILE: MSMg01no547_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:02 2005
(548 letters)
>mm_chr6_25508124_25509071
Length = 948
Score = 1038 bits (537), Expect = 0.0
Identities = 546/549 (99%), Gaps = 2/549 (0%)
Strand = Plus / Minus
Query: 1 acattttttctttaaaagaatgtctttgggtatttgaactacaaattacataaatttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 acattttttctttaaaagaatgtctttgggtatttgaactacaaattacataaatttaaa 689
Query: 61 ataggaatagcttatatggaagctcttctttcctaactagtaccagaaaagtcaggagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ataggaatagcttatatggaagctcttctttcctaactagtaccagaaaagtcaggagag 629
Query: 121 acagtacagaggcaaaaacatgtttgtgattcatgtattcaatctctatgtgtgcagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acagtacagaggcaaaaacatgtttgtgattcatgtattcaatctctatgtgtgcagatt 569
Query: 181 catatatttaatctctgaatccaagggatgaaaatatgctttaacaggaaaggaggtaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 catatatttaatctctgaatccaagggatgaaaatatgctttaacaggaaaggaggtaga 509
Query: 241 ctaatatttgtctcctccaagtttatatggtgttgctttagataacttggtaattgtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctaatatttgtctcctccaagtttatatggtgttgctttagataacttggtaattgtatt 449
Query: 301 caatttatgttcactggatttgcaatgtaacatcttcatatacttcatgtgttactacct 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 448 caatttatgttcactggatttgcaatgtaacatcttcatatacttcatgttttactacct 389
Query: 361 gcctgttaccactgcttact-ctttaaagggccaaatcttgaataccaggtgtggtatct 419
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcctgttaccactgcttactac-ttaaagggccaaatcttgaataccaggtgtggtatct 330
Query: 420 caatggagaatggtcagattaaaatggtttgagatgtggtcatttcgcatcaacaaatac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caatggagaatggtcagattaaaatggtttgagatgtggtcatttcgcatcaacaaatac 270
Query: 480 tgtttcagatactagatacaaatttgaattccatgtgtttcttttattagtttacttggt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtttcagatactagatacaaatttgaattccatgtgtttcttttattagtttacttggt 210
Query: 540 gtcagggtc 548
|||||||||
Sbjct: 209 gtcagggtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
