BAC Information

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BAC

Clone NameMSMg01-547H18
Chromosome6 (Build37)
Map Location 48,661,032 - 48,661,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6
Downstream geneGimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547H18.T7 (MSMg01no547_h18.b1)MSMg01-547H18.TJ (MSMg01no547_h18.g1)
ACCAG612063AG612064
length705734
length of high quality
(start - end)
354 (45 - 398)669 (66 - 734)
definitionCHROMAT_FILE: MSMg01no547_h18.b1 PHD_FILE: MSMg01no547_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:08 2005CHROMAT_FILE: MSMg01no547_h18.g1 PHD_FILE: MSMg01no547_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGGTTATCTCAGCACTTGGACCTTACTTAGTCTTCCACACAGCT
GTGGCTTAGCGACTCTCTGGTCACGTTGTCACTTTTCAGTGACACATCTT
CAAGTAGCTTCCTAACACACAGTGGATGCAAAAGCTTCTTTTTAAGACAC
TGCAGATTTGCAGGGGCCTCCATGGTACCCAGAAGACTGAGGGATGATTT
GATTCGTGTGGGATTCCAGATGGAAACCATTTCCTTAGCGTGATGTGAAA
GCCCTGCTCTGCTGTAGTTTTACTAATACTGCTGAGAACCTGAGTGGTCT
TCTTACTCCTACATCTCTGAACACAGCGTATTACTTCTCCTCTGAGAGCC
TTTAATGTCTACCCCAGTGGCTCAGCAGTCAGAGCGTCACCTGCTCTTGC
AGAGGACTCAGCTCTGTTCTCGTCTCAACACGGATGGACTCCTTGACCCC
CGACCCAAATGACCCCAATCTGGCGGTTTTCAACCACCTGGAAATTCCAG
CCTGGGGGGAAATTAACCCTCCGGGCCCCCCGGGGACCCTTGCCCCACTA
AAAAAATGTGGCGGGCTTTTATTAAAAATTTTACGGGGGGAAATCCCAAC
CCCCTTTTTCCTAAAGGAATTTCCGGGAATTTTCCCCCGCCAAAGAGGAT
TTTAT
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGTTCAGTAGCACTAGCTCCTCAGTTCCTGGTA
AAATACAAACAAACTCTGGAATAAAAGCACTGGCTTCAGTCCCTTGAAGG
TCTCCAAATTTCCATTCAAAACCAGGGAACTTCCTCCAGAAAAGTTAAAT
CATCCAAAGTGAGACTGGGAAGTAAAGGTTGGAAAGAGCTCTACACCCGA
ACATCACATTTTTATCTCACATCCGTCAGGTTGGGCCCAGCTCTGCTGCA
GTAACAAGTACTGAGTTCTCAGGAGCTAAATGCCAGCTGATGTCTGGCCC
GATCTGCCACAGATCTGAGAGACTCAAAGCCATCTTACAGAAAACAGTAG
ATATCAGAACTAAAAACAGATGCTTCATTCTGATTATGAATGTGAAAAGC
AACAGAATTTATATAGGTGATGAACATGATAACAGAGTACTATGTAAGTC
CTAAAAAACACCCATGTTGAGACAATGTGCTGACTAACACTGGGAAACTG
GCACAAGGGTGTCCAGCATATGCCCACAGAGCCCTACACATGGTCCAAGA
CAAGGCAGAACTTACTTAAAGTGTGAGGTTTATTTATTTACTTACTTATT
GCAGATTAGTGTTTGCCTGTATGTGTACAGGTGCCCTATGTGTATGACTT
TGCTGTAGTGGTGAGAAAAGTGCACAGATCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_h18.g1 MSMg01no547_h18.g1 CHROMAT_FILE:
MSMg01no547_h18.g1 PHD_FILE: MSMg01no547_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:08 2005
         (669 letters)



>mm_chr6_48660832_48661901
          Length = 1070

 Score = 1210 bits (626), Expect = 0.0
 Identities = 656/666 (98%), Gaps = 1/666 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttcagtagcactagctcctcagttcctggtaaaatacaaacaaactctggaataaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tctgttcagaagcactagctcctcagttcctggtaaaatacaaacaaactctggaataaa 807

                                                                       
Query: 61  agcactggcttcagtcccttgaaggtctccaaatttccattcaaaaccagggaacttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agcactggcttcagtcccttgaaggtctccaaatttccattcaaaaccagggaacttcct 747

                                                                       
Query: 121 ccagaaaagttaaatcatccaaagtgagactgggaagtaaaggttggaaagagctctaca 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ccagagaagttaaatcatccaaagtgagactgggaagtaaaggttggaaagagctctaca 687

                                                                       
Query: 181 cccgaacatcacatttttatctcacatccgtcaggttgggcccagctctgctgcagtaac 240
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 686 cccgaacatcacatttttatctcgcatccgtcaggctgggcccagctctgctgcagtaac 627

                                                                       
Query: 241 aagtactgagttctcaggagctaaatgccagctgatgtctggcccgatctgccacagatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aagtactgagttctcaggagctaaatgccagctgatgtctggcccgatctgccacagatc 567

                                                                       
Query: 301 tgagagactcaaagccatcttacagaaaacagtagatatcagaactaaaaacagatgctt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgagagactcaaagccatctgacagaaaacagtagatatcagaactaaaaacagatgctt 507

                                                                       
Query: 361 cattctgattatgaatgtgaaaagcaacagaatttatataggtgatgaacatgataacag 420
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cattctgattatgaaagggaaaagcaacagaatttatataggtgatgaacatgataacag 447

                                                                       
Query: 421 agtactatgtaagtcctaaaaaacacccatgttgagacaatgtgctgactaacactggga 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtactatgtaagtcctaaaaaccacccatgttgagacaatgtgctgactaacactggga 387

                                                                       
Query: 481 aactggcacaagggtgtccagcatatgcccacagagccctacacatggtccaagacaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aactggcacaagggtgtccagcatatgcccacagagccctacacatggtccaagacaagg 327

                                                                       
Query: 541 cagaacttacttaaagtgtgaggtttatttatttacttacttattgcagattagtgtttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagaacttacttaaagtgtgaggtttatttatttacttacttattgcagattagtgtttg 267

                                                                       
Query: 601 cctgtatgtgtacaggtgccctatgtgtatgact-ttgctgtagtggtgagaaaagtgca 659
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 cctgcatgtgtacaggtgccctatgtgtatgactgttgctgtagtggtgagaaaagtgca 207

                 
Query: 660 cagatc 665
           ||||||
Sbjct: 206 cagatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space:   698540
Effective search space used:   698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)