BAC Information

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BAC

Clone NameMSMg01-547J18
Chromosome6 (Build37)
Map Location 120,520,993 - 120,521,315
singlet/doubletsinglet
Overlap gene1700072O05Rik
Upstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5
Downstream geneCecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547J18.T7 (MSMg01no547_j18.b1)MSMg01-547J18.TJ (MSMg01no547_j18.g1)
ACCAG612156AG612157
length757752
length of high quality
(start - end)		324 (231 - 554)629 (66 - 694)
definitionCHROMAT_FILE: MSMg01no547_j18.b1 PHD_FILE: MSMg01no547_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:17 2005CHROMAT_FILE: MSMg01no547_j18.g1 PHD_FILE: MSMg01no547_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCAATACGACTACTATATGTCGAGGATCCGCGGAATTCTGGGAT
TACTGGGGTGCATCACCAAACCAAGCTCCTTTTGGTTGCTGTTGTTACTG
ACCTTGCATTTACAGAGATCTGCCTAATTCTATCTGCCTCTGTCCCCAAG
TGCTGGGATTAAAGGTGTGCACTACCACCACACTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTACATACTTACTTACTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTCCCTCCCTCCGTCCCTCCCTCCCTTCCTTCCTTCCTTCCT
TTTTAAGGAAAGGAATAATAGTGAAAAGAAGAGAAAGATTCACACACACA
TTAGGCACATTTGTTGTGGGCACATTAGAAAGACAGGAGGAAAAGTCCCA
GTAACACCCAAGATGACCTTGAGGTGACCAACGTGAAGTGTAGGTTTAAG
GAGAAGGGAAAGGTAGGCAGAACTAAGCAATCCCAGCCAAGGTGTCCCGC
CAAGCCATCGCTGTCTCTGCTGTAGTCTGTCTTGCAAGGTGGTCTGACAA
CTTAGGAGAATGATGTGAAGTCTCTTCCTGGGAGAGAGCTGGTCTGACCG
GAACTAGGCTCCAGTCTTTTCCTTCTCTTAGCATGAGACTCCCCAGGGGA
AACTCTAGTTCCTTGGGGATCATTGTCCCAACAGCCTGATATCCAGGAGG
CACCAGTGTCTGTTTAGAATGTCCACATTCCCCAAGGAAGGATAACGAAT
CTTGAGN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCCATTACCACCTTCTTGTTATTACAACCTTGC
TATGTAGTTCAGGCTAGTCTGGAACTTAGGATCCTCCTGCCTTTGCCCCT
CAAAGGACCTCCTTTCCCTCAGTCTCTCCTCCATTTTTGTCCCTGCAGTT
CTTTTTGACAGGAATAATTAGCTGGTCCGAGGCAGCAATATATACGTATA
CAGTAGAGGACTGCCTGGTCTGGCCTCAATGAGAGATGATGTGCCTAACC
TAGCTGGAGAGACTTGAGGCCCTAGGGAGTGGGGAGGCCTGGCAGAAGGG
TGGAGGTGGCGGTGAGGTGCGGGTGGAGGCATTTTCTTGGAGACAGGGTG
GAGGAGAAATGGGATGATGAGCTGTGTATGTGTGGCGGGGGGCAGAAAAA
AAGAAAGAAAAAGAAAGAAAGAATGTAGGCTGGGGAGCTCCAGAGAACCT
GGGGTCAGTTCCCAGCACCCACATAGGATAGCTCACAACTGTCTGTAACT
CAAGGTCCAGTGGATACAACTCCCTCACACAGACATACATAAAAGACAAA
CACTAAATATGTACAAAAGAATAAGCAGATAAACTTTTTTTTTTTTTTTT
TTTGGTTTTTCAGTGTAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACC
AGGTTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_j18.b1 MSMg01no547_j18.b1 CHROMAT_FILE:
MSMg01no547_j18.b1 PHD_FILE: MSMg01no547_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:17 2005
         (324 letters)



>mm_chr6_120520797_120521515
          Length = 719

 Score =  553 bits (286), Expect = e-162
 Identities = 314/328 (95%), Gaps = 9/328 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccttccttccttccttccttc----cttcctccctccctccgtccctccctcccttc 56
           ||||||||||||||||||||||||    || ||||||||||||| ||||||||||||| |
Sbjct: 197 cttccttccttccttccttccttcttccctccctccctccctccctccctccctccctcc 256

                                                                       
Query: 57  cttccttccttcctttttaaggaaaggaataatagtgaaaagaagagaaagattcacaca 116
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 257 cttccttccttcctttttaaggaaaggaataatagtgaa-----gagaaagattcacaca 311

                                                                       
Query: 117 cacattaggcacatttgttgtgggcacattagaaagacaggaggaaaagtcccagtaaca 176
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312 cacattaggcacatttgttgtgggcacattagaaagacaggaggaaatgtcccagtaaca 371

                                                                       
Query: 177 cccaagatgaccttgaggtgaccaacgtgaagtgtaggtttaaggagaagggaaaggtag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cccaagatgaccttgaggtgaccaacgtgaagtgtaggtttaaggagaagggaaaggtag 431

                                                                       
Query: 237 gcagaactaagcaatcccagccaaggtgtcccgccaagccatcgctgtctctgctgtagt 296
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 432 gcagaactaagcaatcccagccaaggtgtcccgccaagccattgctgtctctgctgtagt 491

                                       
Query: 297 ctgtcttgcaaggtggtctgacaactta 324
           ||||||||||||||||||||||||||||
Sbjct: 492 ctgtcttgcaaggtggtctgacaactta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 719
Length adjustment: 9
Effective length of query: 315
Effective length of database: 710
Effective search space:   223650
Effective search space used:   223650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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