XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCTAA
TTTTGACTCTAGAGTAACAAAGTTAACATAAAGTAAAGACATTTAGGTAG
AACTGGGGAACCAAGACTATAAAGAACATATTTTTTCCTTGTGTCTGATA
ACCTTGTTTCTTAGGTGCTAAAAAGAATGCAGGATAGGCAAAAATGTCAG
GGCCCTGCCCCAACAGTTAAATACCAAGTGAGGCTGTGAGGAGTATGTTG
TCAGTGACTTGGACCAAAGCTGCTAACTATTGGCAACTTAACTCTTCTTT
CTATTCTGGTCCAAAGATGATGGCTTCTGGCAATTTTACTCCTGCTGATA
GCAGCAGGAGATTAAGGGGAAAACAGTTTAAATACTTGGGTTCTGTACTG
GCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGGA
GCTTGAGTTGGAGAAATGCCTCCAAGAGATCCTTAGTCTCTTGGAAATGT
AAGAAATTTTCTCAACTAGTGGTCAAGGGGGGAGGTCCCCTTGTGGGTGG
TGCCATCTCTGGGCTGGTAGTCTTGATTCTATAAGAGAGCAGGCTGAGCA
AGCCAGAGGAAGCAAGCCTCCATGGCCTCTGCATCTGCTCCTGCTTCCTG
ACCTGCTTGAGTTCCAGTGCTGACTTCCTTCAGTGATGAACAGCAATGTG
GAAGTGTAAGCTGAATAAACCTTTTCCTCCCAAATTTGATTCTTGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTGCAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAA
AAATGTTCAACAACCTTAATCATTAGGGAAATGCAAATCAAAACAACCCC
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
TCAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTT
TCTCAGAAAATTGGACATGGTACTACCGGAGGATCACGCAATACCTCTCT
TGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAAGAAACATACTAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAACAACCCA
GATGCCCCTAAACAGAGGAATGGATACAAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGGATGGATCAGGAGAATATCATCCTGAATGAGGTAATTGCATTACA
AAATAACACACATAATATGCACTCACAGATAAGTGGATATTAGCCCAGAA
ATTTAGAATACCCAAGATATAAGATACAATTTGCTAAACACATGAATCTC
AAGAAGAAGGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGG
GA

Query= MSMg01no547_k05.b1 MSMg01no547_k05.b1 CHROMAT_FILE:
MSMg01no547_k05.b1 PHD_FILE: MSMg01no547_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:19 2005
         (714 letters)



>mm_chr6_110851827_110852940
          Length = 1114

 Score = 1272 bits (658), Expect = 0.0
 Identities = 702/726 (96%), Gaps = 16/726 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctaattttgactctagagtaacaaagttaacataaagtaaagacatttagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gaattctttctaattttgactctagagtaacaaagttaacataaagtaaagacatttaga 264

                                                                       
Query: 65  tagaactggggaaccaagactataaagaacatattttttccttgtgtctgataaccttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagaactggggaaccaagactataaagaacatattttttccttgtgtctgataaccttgt 324

                                                                       
Query: 125 ttcttaggtgctaaaaagaatgcaggataggcaaaaatgtcagggccctgccccaacagt 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttaggtgctaaaaagaatgcaggataggcaaaaatgtcagggccctgccccaacagt 384

                                                                       
Query: 185 taaataccaagtgaggctgtgaggagtatgttgtcagtgacttggaccaaagctgctaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaataccaagtgaggctgtgaggagtatgttgtcagtgacttggaccaaagctgctaac 444

                                                                       
Query: 245 tattggcaacttaactctt-ctttctattctggtccaaagatgatggcttctggcaattt 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattggcaacttaactctttctttctattctggtccaaagatgatggcttctggcaattt 504

                                                                       
Query: 304 tactcctgctgatagcagcaggagattaaggggaaaacagtttaaatacttgggttctgt 363
           ||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||
Sbjct: 505 tactcctgctgatagcagcaggagattaagggggaaacagttttcatacttgggttctgt 564

                                                                       
Query: 364 actggctagttttgtgtcaacttgacacaggctggagttatcacagagaaaggagcttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 actggctagttttgtgtcaacttgacacaggctggagttatcacagaaaaaggagcttga 624

                                                                       
Query: 424 gttggagaaatgcctccaagagatccttagtctcttggaaatgtaagaaattttctcaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttggagaaatgcctccaagagatccttagtctcttggaaatgtaagaaattttctcaac 684

                                                                       
Query: 484 tagtggtcaaggggggaggtccccttgtgggtggtgccatctctgggctggtagtcttga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtggtcaaggggggaggtccccttgtgggtggtgccatctctgggctggtagtcttga 744

                                                                       
Query: 544 ttctataagagagcaggctgagcaagccagaggaagcaagcc---------------tcc 588
           |||||||||||||||||||||||||||||| |||||||||||               |||
Sbjct: 745 ttctataagagagcaggctgagcaagccaggggaagcaagccagtaagtaacatcgctcc 804

                                                                       
Query: 589 atggcctctgcatctgctcctgcttcctgacctgcttgagttccagtgctgacttccttc 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atggcctctgcatctgctcctgcttcctgacctgcttgagttccagtgctgacttccttc 864

                                                                       
Query: 649 agtgatgaacagcaatgtggaagtgtaagctgaataaaccttttcctcccaaatttgatt 708
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 865 agtgatgaacagcaatgtggaagtgtaagctgaataaacattttcctcccaaatttgatt 924

                 
Query: 709 cttggt 714
           ||||||
Sbjct: 925 cttggt 930


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)