Query= MSMg01no547_k13.b1 MSMg01no547_k13.b1 CHROMAT_FILE:
MSMg01no547_k13.b1 PHD_FILE: MSMg01no547_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:20 2005
(686 letters)
>mm_chr6_21014929_21016014
Length = 1086
Score = 1237 bits (640), Expect = 0.0
Identities = 670/680 (98%)
Strand = Plus / Plus
Query: 6 aattcatcaatcttttttatgactttcttttatgtagagattaaaaattgtgtactgaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcatcaatcttttttatgactttcttttatgtagagattaaaaattgtgtactgaaa 265
Query: 66 atagatgataattaagtctgtgacattgaatttaacagtttagctaagttgataatcatt 125
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 266 atagatgataattaagtctgtgacaatgaatttaacagtttagctaagttgataatcatt 325
Query: 126 tgttctgagatataattgtagataatgtagactgacaaagacaagaaaaaggcaaaggct 185
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgttctgagatataattgtagaaaatgtagactgacaaagacaagaaaaaggcaaaggct 385
Query: 186 tgtatatgccacactcagcatgtacactgctttatgtatccatgacatatactttcttcc 245
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtatatgccacactcagcatgtaccctgctttatgtatccatgacatatactttcttcc 445
Query: 246 ctattctagttattacttagtgcaggaataaaatacataccccacactaacttttgtcag 305
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 446 ctattctagttattatttagtgcaggaataaaatacacaccccacactaacttttgtcag 505
Query: 306 aatactttgatttttactagtaaggcacagaaaacagtttcaagagatgtaatttttctg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatactttgatttttactagtaaggcacagaaaacagtttcaagagatgtaatttttctg 565
Query: 366 tcttatcaaaaaagaacaagacttagatcacagtttcccctttagcttctttaggaaaca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcttatcaaaaaagaacaagacttagatcacagtttcccctttagcttctttaggaaaca 625
Query: 426 ggcaaaacaatctttttttttattaacataaatatcttgttttatttttttaatattttt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggcaaaacaatctttttttttattaacataaatatcttgttttatttttttaatattttt 685
Query: 486 attacgtattttcctcaattacatttccaatgctatcccaaaagtcccccataccctccc 545
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attacatattttcctcaattacatttccaatgctatcccaaaagtcccccataccctccc 745
Query: 546 cctccactcccctaccgacccattcccactttttggccctggcattccccagtactgggg 605
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cctccactcccctacccacccattcccactttttggccctggcattccccagtactgggg 805
Query: 606 taaataaagtttgcctgtccaatgggcatctctttccactgatggccaactaggtcatct 665
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 806 tatataaagtttgcctgtccaatgggcatctctttccactgatggccgactaggccatct 865
Query: 666 tttgatacatatgcagctag 685
||||||||||||||||||||
Sbjct: 866 tttgatacatatgcagctag 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_k13.g1 MSMg01no547_k13.g1 CHROMAT_FILE:
MSMg01no547_k13.g1 PHD_FILE: MSMg01no547_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:21 2005
(660 letters)
>mm_chr6_21079595_21080654
Length = 1060
Score = 1180 bits (610), Expect = 0.0
Identities = 646/660 (97%), Gaps = 5/660 (0%)
Strand = Plus / Minus
Query: 1 ctaagagctaaaaatgatttggctgggactggaaaagaggacttctttttcttgtttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ctaagagctaaaaatgatttggctgggactggaaaagaggacttctttttcttgtttgtt 877
Query: 61 tgcttacttgtttttaaagatttatttatttaaacaaaatacaaaatgttgttcaggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tgcttacttgtttttaaagatttatttatttaaacaaaatacaaaatgttgttcaggtgt 817
Query: 121 acagaaaaaaaaacagtaagctaacttttatatactaataacagatttttggaacaacat 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 816 acagaaaaaaaaacagtaagctaacttttatatactaataac--atttttggaacaacat 759
Query: 181 tctttttatgtttggtttataaattttatttcctagtaaaaggtattcaaatattttatg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tctttttatgtttggtctataaattttatttcctagtaaaaggtattcaaatattttatg 699
Query: 241 atattagaggctctatgtttctattttattataaatattattacatgaagagggaccctc 300
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atattagaggctcaatgtttccattttattataaatattattacatgaagagggaccctc 639
Query: 301 attaaaagatttaaagctgcctggtacagaaactcagatactttgtactatgataggtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 attaaaagatttaaagctgcctggtacagaaactcagatactttgtactatgataggtgc 579
Query: 361 tttctcatgctaaacaaacatttacacctctgcttcattctcagccatgttttccttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttctcatgctaaacaaacatttacacctctgcttcattctcagccatgttttccttttc 519
Query: 421 ctttttccttttttggcaaggtttttttttaattattattattagatattttcttaatat 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 518 ctttttccttttttggcaaggttttttttt---tattattattagatattttctttatat 462
Query: 481 acatttcaaatgctatccttaaagttccctataccctctccctgccctgctcccctaccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acatttcaaatgctatccttaaagttccctataccctctccctgccctgctcccctaccc 402
Query: 541 acctaatcccacttctcggccctggtgttcccctgtactgggcatataaagtttgcaaga 600
||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 401 acctactcccacttcttggccctggtgttcccctgtactgggcatgtaaactttgcaaga 342
Query: 601 ccaatgggtctctcttaccaattcactgtatataattgtatctgtgaaacttgaacttac 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccaatgggcctctcttaccaattcactgtatataattgtatctgtgaaacttgaacttac 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
