BAC Information

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BAC

Clone NameMSMg01-547L01
Chromosome6 (Build37)
Map Location 116,548,420 - 116,549,118
singlet/doubletsinglet
Overlap genenone
Upstream geneMkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215
Downstream geneZfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547L01.T7 (MSMg01no547_l01.b1)MSMg01-547L01.TJ (MSMg01no547_l01.g1)
ACCAG612217AG612218
length750757
length of high quality
(start - end)		663 (40 - 702)573 (58 - 630)
definitionCHROMAT_FILE: MSMg01no547_l01.b1 PHD_FILE: MSMg01no547_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:23 2005CHROMAT_FILE: MSMg01no547_l01.g1 PHD_FILE: MSMg01no547_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTAGA
AATTTCCGAAAATGAAACATACAACAAAACTTGTGGGAAACATTAAAAGC
AATTATAGGGGATGGAGAGATGGCTCAGCGGTTAAGAGCACTAATTGCAC
TTCCAAAGGTCCTGAGTTCAATTCCCAGCAACAACATGGTGGCTCACAGC
CATCTGTAATGGAATCTGATACCCTCTTCTGGTGTGTCTGAAGACGGCTA
TGATGTACTCATATAAAATAAATAAATAAATAAATATTTAATTTAAAAAA
GCAATTATATGAGGGAAATTTATAACTCTATGTACTTACATTTTAAAATA
AGTAAAAAAAAAACAGCACAAATAAATGATTGGTGCAATCGCAAACAAGC
TGAACCCAATCCACTGGACATCAAGAAATTATGAAAAAATATATATATGA
AAAAAATATATATTTATATACATATAAATCAGAACCAAAATTAATGAAAT
ATGAACAAAAAAAAGAGACTAAGACTCAGTGAATCTAAGGATGGTTCCTT
GAGAAGATCAACAAGATCAACAGACCTGTGGCCCAACTAACCAAAGAAAG
AAAGAGGACCCAAGGTGCCAGAATCAGAAATGAACATGGAAACAATACAG
CAGACACCAAAGAAATTCAGAACAGTATAAGGGAATGCTTTAAAAAGCTC
TCCGCAATTAGGGTGGAAAATCTAAGAGAATGGGTGAATTTCTTTCTAGA


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTGCAATTCAATGAAATTGAAAGCACAACATACCCAAACTTACAGGATA
CAATGAAAGCTGTGCTAAGAGGAAAGTTCATAGCACTAAGTGACTCTACT
CAGTGAAGAAATTGGTGTTAGCCAAACTAACTAAAAGACAGAGAGACATT
ATCCAAATTAACAAAATTAGAAATGAAAAGGAAGATATAACAACAGACTC
TGAGGAAATCCAAAGAATCATTAGATCTTACTTCAAAAGCTTATACTCCA
CATAATTGGTAAATTTTAACCAAATGGACAATTTTCTTGATAGATGCCAC
TTACCAAACTTAAATCAAAACCAGGTAAACAATGTAAATAATTCTATATT
CCCTAAGGAAATGGAAGCAGCCGTTTAGATCTCCCAACCGGGGGTGGGAG
GGTGGGAAGCCCAGGCACAGATGGTTTTAGCACAGTATGCTACAAGAATT
TCAGAGAGAAGCTAATACCAATACACCTCAAACTAGTCAACAAAATAGAA
AGAAGAAACACTGCCAAACTCATTCTGTGAGGCAACAATCACCTTGATAC
CTAAACCACAGAAAGACTCCACAAAGAAGACAATTTCCAACTAGCGTCCC
TCATAAAACTGATGCTAACATACTCAATAAAATACTTGTGAATCAAACTC
AAGAGCACATCAAAAACAACATCCACCATGATAGATTAAGCTTTGTCCCA
GAGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_l01.b1 MSMg01no547_l01.b1 CHROMAT_FILE:
MSMg01no547_l01.b1 PHD_FILE: MSMg01no547_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:23 2005
         (663 letters)



>mm_chr6_116548236_116549303
          Length = 1068

 Score = 1112 bits (575), Expect = 0.0
 Identities = 654/703 (93%), Gaps = 44/703 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcctagaaat---ttccgaaaatgaaacatacaacaaaacttgtgggaaacattaa 57
           ||||||||||||||   |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 185 attctcctagaaataagt---gaaaatgaaacatacaacaaaacttgtgggaaacattaa 241

                                                                       
Query: 58  aagcaattataggggatggagagatggctcagcggttaagagcactaattgcacttccaa 117
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aagcaattataggggttggagagatggctcagcggttaagagcactaattgcacttccaa 301

                                                                       
Query: 118 aggtcctgagttcaattcccagcaacaacatggtggctcacagccatctgtaatggaatc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aggtcctgagttcaattcccagcaacaacatggtggctcacagccatctgtaatggaatc 361

                                                                       
Query: 178 tgataccctcttctggtgtgtctgaagacggctatgatgtactcatataaaataaataaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgataccctcttctggtgtgtctgaagacggctatgatgtactcatataaaataaataaa 421

                                                                       
Query: 238 taaataaata----------------tttaatttaaaaaa-gcaattatatgagggaaat 280
           ||||||||||                |||||||||||||| |||||||||||||||||||
Sbjct: 422 taaataaataaacaaataaataaatatttaatttaaaaaaagcaattatatgagggaaat 481

                                                                       
Query: 281 ttataactctatgtacttacattttaaaataagtaaaaaaaaaa----cagcacaaataa 336
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 482 ttataactctatgtacttacattttaaaataagtaaaaaaaaaaaaaacagcacaaataa 541

                                                                       
Query: 337 atgattggtgcaatcgcaaacaagctgaacccaatccactggacatcaagaaattatgaa 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgattggtgcaatcgcaaacaagctgaacccaatccactggacatcaagaaattatgaa 601

                                                                       
Query: 397 aaaa-------tatatatatgaaaaaaatatatat-t-------tatatacatataaatc 441
           ||||       ||||||||| | | | |||||||| |       |||||| |||||||||
Sbjct: 602 aaaaaaatatgtatatatat-atatatatatatatatatatatatatatatatataaatc 660

                                                                       
Query: 442 agaaccaaaattaatgaaatatgaacaaaaaaaa-gagactaagactcagtgaatctaag 500
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 661 agaaccaaaattaatgaaatatgaacaaaaaaaaagagactaagactcagtgaatctaag 720

                                                                       
Query: 501 gatggttccttgagaagatcaacaagatcaacagacctgtggcccaactaaccaaagaaa 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gatggttccttgagaagatcaacaagatcaacagacctgtggcccaactaaccaaagaaa 780

                                                                       
Query: 561 gaaagaggacccaaggtgccagaatcagaaatgaacatggaaacaatacagcagacacca 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaaagaggacccaaggtgccagaatcagaaatgaacatggaaacaatacagcagacacca 840

                                                      
Query: 621 aagaaattcagaacagtataagggaatgctttaaaaagctctc 663
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aagaaattcagaacagtataagggaatgctttaaaaagctctc 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1068
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1058
Effective search space:   690874
Effective search space used:   690874
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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