Query= MSMg01no547_o11.b1 MSMg01no547_o11.b1 CHROMAT_FILE:
MSMg01no547_o11.b1 PHD_FILE: MSMg01no547_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:39 2005
(531 letters)
>mm_chr6_92677510_92678444
Length = 935
Score = 934 bits (483), Expect = 0.0
Identities = 522/547 (95%), Gaps = 21/547 (3%)
Strand = Plus / Plus
Query: 4 gaattcctttctcagctctcctccctcccaagccccatatgatgaacaaaagttgccagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcctttctcagctctcctccctcccaagccccatatgatgaacaaaagttgccagg 250
Query: 64 ttgctggctccacacatggtatgttattcacgggctgctctactgcgatgagccaactca 123
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 ttgctggctccacacatggtatgttattcacgggctgctctgctgcgatgagccaactca 310
Query: 124 ttagtttcaaagctgcagattaatcttacatttctgtttcctggaggtgaaaggtcattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttagtttcaaagctgcagattaatcttacatttctgtttcctggaggtgaaaggtcattt 370
Query: 184 tttatctccttagctttatccaccacccaggaggaaattggatctttaagcatgagggac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttatctccttagctttatccaccacccaggaggaaattggatctttaagcatgagggac 430
Query: 244 ctttctccccacgaagcagctgttcgagcttctcttctatgttttaagtgaaaaacggat 303
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 431 ctttctccccacgaagcagctgttcgagcttctcttctatgttttgagtgaaaaacggat 490
Query: 304 acagagaactggaattgtgtgtgtgtgtgtgtgtttaaaccaaaccaaaccaaacc---- 359
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 491 acagagaactggaattgtgtgtgtgtgtgtgt--ttaaaccaaaccaaaccaaacccaaa 548
Query: 360 -----------aaaaaaaaaaacaaaaaaaaaaccagaagagcatcttttaaaagtaaga 408
||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 549 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacagaagagcatcttttaaaagtaaga 608
Query: 409 gaaatcttgtaaattgtggggcagggggaaaaaaaaaaaa----caacgaggaagaggct 464
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 609 gaaatcttgtaaattgtggggcagggggaaaaaaaaaaaaaaaacaacgaggaagaggct 668
Query: 465 agtgcaagtagtgttgagaacgttagatacaaaacaaatgctccccagcaagatgaagtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agtgcaagtagtgttgagaacgttagatacaaaacaaatgctccccagcaagatgaagtt 728
Query: 525 ggtaaga 531
|||||||
Sbjct: 729 ggtaaga 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 935
Length adjustment: 10
Effective length of query: 521
Effective length of database: 925
Effective search space: 481925
Effective search space used: 481925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_o11.g1 MSMg01no547_o11.g1 CHROMAT_FILE:
MSMg01no547_o11.g1 PHD_FILE: MSMg01no547_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:39 2005
(644 letters)
>mm_chr6_92828455_92829498
Length = 1044
Score = 642 bits (332), Expect = 0.0
Identities = 500/646 (77%), Gaps = 143/646 (22%)
Strand = Plus / Minus
Query: 1 ttttgtgcatgaaagtttcagtgtctacatatataaaacacataaacacatgcacaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ttttgtgcatgaaagtttcagtgtctacatatataaaacacataaacacatgcacaaatc 974
Query: 61 agacagagagacagacagactgagagagacagagaaggagacacagagagagagggggg- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 973 agacagagagacagacagactgagagagacagagaaggagacacagagagag-gggggga 915
Query: 120 caaaga-ggggggcagaaagagaggcagagacagagaggcagagagacagagaggcagac 178
|||||| |||||||||||||||||||||||||||
Sbjct: 914 caaagagggggggcagaaagagaggcagagacag-------------------------- 881
Query: 179 aggcagagagacaaacacagagacagagagacagacacagaaaggcagagagacagacac 238
Sbjct: 881 ------------------------------------------------------------ 881
Query: 239 agagaggcagagagacagacacagaaaggcagagagacagacacagagaggcagagagac 298
||||||| ||||| ||||||
Sbjct: 880 agagagg--------------cagaa----------------acagag------------ 863
Query: 299 agacacagaaaggcagagagacagacacagagaggcagagagacagacacagccatagag 358
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 862 ----------aggcagagagacagacacagaga--cagagagacagacacagccatagag 815
Query: 359 agagaatattatgcattaatgtagaggcatggagggaatgagaaaaaatctaaatatgac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 agagaatattatgcattaatgtagaggcatggagggaatgagaaaaaatctaaatatgac 755
Query: 419 tggctaggtattcacggaattctgtgtttaagaaaggtaaggtatctgatggaagaaata 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 754 tggctaggtattcacggaattctgtgtttaagaaaggtatggtatctgatggaagaaata 695
Query: 479 ttgagagggtggaaaattctagagtgcttctattgcctgggaggttgactgtgtataaat 538
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 694 ttgagagggtggaaaattctagagtgtttctattgcctgggaggttgactgtgtataaac 635
Query: 539 atccaacatcatgagggctgtattgtacaacctgcatgccaagtctgcaattactgtggg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atccaacatcatgagggctgtattgtacaacctgcatgccaagtctgcaattactgtggg 575
Query: 599 agactattggcatagactagcactggagtgtgataaggtctctcca 644
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agactattggcatagactagcactggagtgtgataaggtctctcca 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
