Query= MSMg01no547_o18.b1 MSMg01no547_o18.b1 CHROMAT_FILE:
MSMg01no547_o18.b1 PHD_FILE: MSMg01no547_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:41 2005
(640 letters)
>mm_chr6_36917198_36918237
Length = 1040
Score = 1073 bits (555), Expect = 0.0
Identities = 612/633 (96%), Gaps = 4/633 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagctgaatagacgtggttgaatggaagtctttgttggcgtgtctttgataag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagctgaatagacgtggttgaatggaagtctttgttggcgtgtctttgataag 264
Query: 65 aatattttgtctctggatccttctcccctctggctttctgctttctggcttccacaacat 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatttcgtctctggatccttctcccctctggctttctgctttctggcttccacaacat 324
Query: 125 gagtggctctgatccagctcactgtctctgacacagtgctctgcctcagccaactgcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtggctctgatccagctcactgtctctgacacagtgctctgcctcagccaactgcaca 384
Query: 185 ctgagcactcttaacccaggagccaaataaatcctcccaccctaagatttttttcactcc 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ctgagcactcttaacccaggagccaaataaatcctcccatcctaagatttttttcactcc 444
Query: 245 gccattttgtcttaaggtttagcaaccaaagctaatcaagctaccaaggtgactttatca 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 445 gccattttgtcttaaggtttagcaaccaaagctaatcaagccaccaaggtgacattatca 504
Query: 305 gggatgtcacgtagttatcagatgagtcctaaggtaatgggccagcctttaaaaattgtt 364
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 gggatgtcaggtagttatcagatgagtcctaaggtaatgggccagcctttaaaagttgtt 564
Query: 365 agtaagaacataaattattgaaatatggaaattcttcagaaaattgaagtataattactg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtaagaacataaattattgaaatatggaaattcttcagaaaattgaagtataattactg 624
Query: 425 tgtgacccagacataccacctctgtccatgcttacagaacgaagtctaggttgaccacca 484
|||||| ||||||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct: 625 tgtgactcagacataccacctctgaccatgctttcagaacaaagtctaggttgaccacca 684
Query: 485 caaacacacacacacacacacacacacacacacacacacacacacacactccccaaaaaa 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 taaacacacacacacacacacacacacacacacacacacacacac----tccccaaaaaa 740
Query: 545 gaaaaagaaaagataatgggtcaggaaagcaacttcccttctgactttccgtcactcata 604
|| |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 741 gataaagaaaaaataatgggtcaggaaagcaacttcccttctgtctttccatcactcata 800
Query: 605 gatctgatgaaactgagtaaaacaacacagaaa 637
|||||||| |||||||||||||||| |||||||
Sbjct: 801 gatctgatcaaactgagtaaaacaatacagaaa 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_o18.g1 MSMg01no547_o18.g1 CHROMAT_FILE:
MSMg01no547_o18.g1 PHD_FILE: MSMg01no547_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:41 2005
(677 letters)
>mm_chr6_37088654_37089730
Length = 1077
Score = 1083 bits (560), Expect = 0.0
Identities = 563/564 (99%)
Strand = Plus / Minus
Query: 114 aggcaaaaaaggcataccatcattttcttgcatgattcaagtatggtgagtttccatgtg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 aggcaaaaaaggcataccatcattttcttgcatgattcaagtatggtgagtttccatgtg 1018
Query: 174 ttgtaatttatgacttcaagctaaaggatgtaacataacagtaattattgctttctgcct 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ttgtaatttatgacttcaagctaaaggatgtaacataacagtaattattgctttctgcct 958
Query: 234 ctcgtggtgggacatgacaaaatatgtgtttactcacttattctgtgacttttagtttgt 293
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 957 ctcgtggtgggacatgacaaaatatgtgtttactcacgtattctgtgacttttagtttgt 898
Query: 294 tttttatttttttaaaaaatgtattgatatttgctgattatcaggcagtaagtcagttgc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tttttatttttttaaaaaatgtattgatatttgctgattatcaggcagtaagtcagttgc 838
Query: 354 tgtaaatttaatgtttttatgaatcttagaacctagtatgaaaggaaatgttaatcaaaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgtaaatttaatgtttttatgaatcttagaacctagtatgaaaggaaatgttaatcaaaa 778
Query: 414 aattatgccaatatgtgaataagtgcaagggaaggtaaataatgggaaagaaacatgaat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aattatgccaatatgtgaataagtgcaagggaaggtaaataatgggaaagaaacatgaat 718
Query: 474 ttatgacagaaactaacagaaaaacttaacatggatcatggggcattgagaactttttga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttatgacagaaactaacagaaaaacttaacatggatcatggggcattgagaactttttga 658
Query: 534 ggaaataactcttgatttgatggtcacactacaaatagaaattagccatataaattaatc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ggaaataactcttgatttgatggtcacactacaaatagaaattagccatataaattaatc 598
Query: 594 cagagacaggtaaagaaattggagaaagacaaaaaacatatagtgaacatttttgatggg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cagagacaggtaaagaaattggagaaagacaaaaaacatatagtgaacatttttgatggg 538
Query: 654 gatagttgagcaaagacctgaggg 677
||||||||||||||||||||||||
Sbjct: 537 gatagttgagcaaagacctgaggg 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
