Query= MSMg01no548_e22.b1 MSMg01no548_e22.b1 CHROMAT_FILE:
MSMg01no548_e22.b1 PHD_FILE: MSMg01no548_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:11 2005
(564 letters)
>mm_chr6_32756981_32757943
Length = 963
Score = 685 bits (354), Expect = 0.0
Identities = 552/732 (75%), Gaps = 173/732 (23%)
Strand = Plus / Plus
Query: 5 gaattcacccgctttttctacttcttttaattttttttccttgtttgtttgctttgagag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 gaattcacccgctttttctacttcttttaattttttttccttgtttgtttgctttgagag 92
Query: 65 agggtctctcaggttgttctgaaactcacttatgcagaccattctggcagacatccaact 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 93 agggtctctcaggttgttctgaaactcacttatgcagaccattctgacagacatccaact 152
Query: 125 gcttgtctcttgagtgctggaattaaagacatgagccactatacctggccatcttgttta 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 153 gcttgtctcttgagtgctggaattaaagtcatgagccactatacctggccatcttgttta 212
Query: 185 cccttcagtccttcctttcccaagcacaagctgctcctcaagcgacctccagccctatcc 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 213 cccttcagtccttcctttcccaagcacaagctgctcctcaagtgacctccagccccatcc 272
Query: 245 ataaccttag-------------------------------------------------- 254
||||||||||
Sbjct: 273 ataaccttagagcatggccaaggggctgggggcgggacacagcataaccttagtgcatgg 332
Query: 254 ------------------------------------------------------------ 254
Sbjct: 333 ccaaggggctgggggcgggacacagcataaccttagtgcatggccaaggggctggaggcg 392
Query: 254 ------------------------------------------------------------ 254
Sbjct: 393 ggacacagcataaccttagtgcatggccaaggggctggaggcgggacacagcataacctt 452
Query: 255 --tgcatggccaaggggctgggggcgggacacagcataaccttagtgcatggccaagggg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agtgcatggccaaggggctgggggcgggacacagcataaccttagtgcatggccaagggg 512
Query: 313 ctgggggcgggacacagcataaccttagtgcatggccaaggggctgggggcgggacacag 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctgggggcgggacacagcataaccttagtgcatggccaaggggctgggggcgggacacag 572
Query: 373 ggcagagccacagtcccaaatatgagacccaagaacaaaaccacaagataacactttttt 432
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 573 ggcagagccagagtcccaaatatgagacccaagaacaaaaccacaagagaacactttttt 632
Query: 433 ttttttttctgtgacttcaggagctagcaagacttcccctccctttttaggtgatgctta 492
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttttttt-ctgtgacttcaggagctagcaagacttcccctccctttttaggtgatgctta 691
Query: 493 atggcaatattagaaagcatttaggacaatatactcacaatgtttacttattatacttac 552
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 692 atggcaatattagaaagcatttaggacaatatactcacaatgtttacttattacacttac 751
Query: 553 aacaagccctta 564
||||||||||||
Sbjct: 752 aacaagccctta 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_e22.g1 MSMg01no548_e22.g1 CHROMAT_FILE:
MSMg01no548_e22.g1 PHD_FILE: MSMg01no548_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:11 2005
(661 letters)
>mm_chr6_32922987_32924047
Length = 1061
Score = 745 bits (385), Expect = 0.0
Identities = 476/559 (85%), Gaps = 80/559 (14%)
Strand = Plus / Minus
Query: 82 caggagatctgaagtaataagtgagaaatgccagtaaataaaagggggctgtatttgctc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 caggagatctgaagtaataagtgagaaatgccagtaaataaaagggggctgtatttgctc 1002
Query: 142 agatgcttgttctgtttagttttgttttgagataattcttaaatcatcagagacccaagt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 agatgcttgttctgtttagttttgttttgagataattcttaaatcatcagagacccaagt 942
Query: 202 tataaagaaagcctcatttttatcccactaacgggcgagtaatgtgccgtcttgccttgc 261
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 941 tataaagaaagcctcatttttatcccaccaacgggcgagtaatgtgcc------------ 894
Query: 262 cttgccttgccttgccttgccttgccttgccttgccttgccttgccttgccttgccttgc 321
Sbjct: 894 ------------------------------------------------------------ 894
Query: 322 cttgccttgccttgccttgccttgccttgccttgccttgccttgccttgccttgccttgc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 --------gccttgccttgccttgccttgccttgccttgccttgccttgccttgccttgc 842
Query: 382 cttgccttgccttgccttgccttgccttgccttgccttgccttgccaacgtggacttgac 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cttgccttgccttgccttgccttgccttgccttgccttgccttgccaacgtggacttgac 782
Query: 442 tcttctgagagtttgtggcacagcagcgcttctctctgaccctacagttccatgtggctt 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tcttctgagagtttgtggcacagcagcgcttctctctgaccctacagttccatgtggctt 722
Query: 502 tggtgttcccagatatccagttgggttgtcttcctggggagggggtgggcagagaagagg 561
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 721 tggtgttcccagatatccagttgggttgtcttcctggggacggggtgggcagagaagagg 662
Query: 562 ttgtgggacaactgcctttctagtggtcactgaagtgtgtgtgtgtgcgcacgcccatgt 621
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 661 ttgtgggacaactgcctttctagtggtcactgaagtgtgtgtgtgtgcgcgcgcccatgt 602
Query: 622 gtgctctgtgtgtgtgtgt 640
|||||||||||||||||||
Sbjct: 601 gtgctctgtgtgtgtgtgt 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 187
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
